Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VANGNB10_RS08250 Genome accession   NZ_LK021130
Coordinates   555092..556318 (-) Length   408 a.a.
NCBI ID   WP_013857686.1    Uniprot ID   A0AAW4AAV2
Organism   Vibrio anguillarum strain NB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550092..561318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS08210 (TVA2091) rpsP 550431..550679 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  VANGNB10_RS08215 (TVA2090) rimM 550709..551263 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  VANGNB10_RS08220 (TVA2089) trmD 551291..552037 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VANGNB10_RS08225 (TVA2088) rplS 552079..552432 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  VANGNB10_RS08230 yacG 552513..552710 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  VANGNB10_RS08235 (TVA2087) zapD 552800..553540 (-) 741 WP_013857689.1 cell division protein ZapD -
  VANGNB10_RS08240 (TVA2086) coaE 553573..554181 (-) 609 WP_013857688.1 dephospho-CoA kinase -
  VANGNB10_RS08245 (TVA2085) pilD 554172..555053 (-) 882 WP_013857687.1 prepilin peptidase Machinery gene
  VANGNB10_RS08250 (TVA2084) pilC 555092..556318 (-) 1227 WP_013857686.1 type II secretion system F family protein Machinery gene
  VANGNB10_RS08255 (TVA2083) pilB 556361..558049 (-) 1689 WP_029189846.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VANGNB10_RS08260 (TVA2082) pilA 558059..558484 (-) 426 WP_040122945.1 pilin Machinery gene
  VANGNB10_RS08265 (TVA2081) nadC 558743..559630 (-) 888 WP_013857682.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VANGNB10_RS08270 (TVA2080) ampD 559755..560306 (+) 552 WP_202599069.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VANGNB10_RS08275 (TVA2079) fldB 560328..560846 (-) 519 WP_013857680.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45329.71 Da        Isoelectric Point: 10.4379

>NTDB_id=1113428 VANGNB10_RS08250 WP_013857686.1 555092..556318(-) (pilC) [Vibrio anguillarum strain NB10]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASIHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKFSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1113428 VANGNB10_RS08250 WP_013857686.1 555092..556318(-) (pilC) [Vibrio anguillarum strain NB10]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAACAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTGGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCTGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCATTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGCGAACAGTCAGGTAACTTAGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAATTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCCGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGTCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTCGTCGGCGGTTTAGTGGTGGCGATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.5

98.039

0.868
  pilC Vibrio campbellii strain DS40M4

74.752

99.02

0.74
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.059

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment