Detailed information NTG1113427

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VANGNB10_RS08245
• Genome accession: NZ_LK021130
• Coordinates: 554172..555053 (-)
• Length: 293 a.a.
• NCBI ID: WP_013857687.1
• Uniprot ID: A0AAW4AAE0
• Organism: Vibrio anguillarum strain NB10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 549172..560053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VANGNB10_RS08210 (TVA2091)	rpsP	550431..550679 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
VANGNB10_RS08215 (TVA2090)	rimM	550709..551263 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
VANGNB10_RS08220 (TVA2089)	trmD	551291..552037 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VANGNB10_RS08225 (TVA2088)	rplS	552079..552432 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
VANGNB10_RS08230	yacG	552513..552710 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
VANGNB10_RS08235 (TVA2087)	zapD	552800..553540 (-)	741	WP_013857689.1	cell division protein ZapD	-
VANGNB10_RS08240 (TVA2086)	coaE	553573..554181 (-)	609	WP_013857688.1	dephospho-CoA kinase	-
VANGNB10_RS08245 (TVA2085)	pilD	554172..555053 (-)	882	WP_013857687.1	prepilin peptidase	Machinery gene
VANGNB10_RS08250 (TVA2084)	pilC	555092..556318 (-)	1227	WP_013857686.1	type II secretion system F family protein	Machinery gene
VANGNB10_RS08255 (TVA2083)	pilB	556361..558049 (-)	1689	WP_029189846.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VANGNB10_RS08260 (TVA2082)	pilA	558059..558484 (-)	426	WP_040122945.1	pilin	Machinery gene
VANGNB10_RS08265 (TVA2081)	nadC	558743..559630 (-)	888	WP_013857682.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32890.17 Da
• Isoelectric Point: 7.2157

>NTDB_id=1113427 VANGNB10_RS08245 WP_013857687.1 554172..555053(-) (pilD) [Vibrio anguillarum strain NB10]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=1113427 VANGNB10_RS08245 WP_013857687.1 554172..555053(-) (pilD) [Vibrio anguillarum strain NB10]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.083	98.294	0.758
pilD	Vibrio campbellii strain DS40M4	76.471	98.635	0.754
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461