Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KHN79_RS11040 | Genome accession | NZ_HG992749 |
| Coordinates | 2452072..2452530 (+) | Length | 152 a.a. |
| NCBI ID | WP_182008844.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1FLJ16 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2447072..2457530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHN79_RS11025 (ACOMICROBIO_LOCUS1622) | pdhR | 2448805..2449572 (-) | 768 | WP_182008842.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| KHN79_RS11030 | ampD | 2449983..2450527 (-) | 545 | Protein_2147 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KHN79_RS11035 (ACOMICROBIO_LOCUS1625) | nadC | 2450913..2451800 (+) | 888 | WP_182008843.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| KHN79_RS11040 (ACOMICROBIO_LOCUS1626) | pilA | 2452072..2452530 (+) | 459 | WP_182008844.1 | pilin | Machinery gene |
| KHN79_RS11045 (ACOMICROBIO_LOCUS1627) | pilB | 2452530..2454215 (+) | 1686 | WP_182008845.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KHN79_RS11050 (ACOMICROBIO_LOCUS1628) | pilC | 2454246..2455469 (+) | 1224 | WP_182008846.1 | type II secretion system F family protein | Machinery gene |
| KHN79_RS11055 (ACOMICROBIO_LOCUS1629) | pilD | 2455540..2456409 (+) | 870 | WP_182008847.1 | A24 family peptidase | Machinery gene |
| KHN79_RS11060 (ACOMICROBIO_LOCUS1630) | coaE | 2456410..2457024 (+) | 615 | WP_182008848.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15648.97 Da Isoelectric Point: 8.4982
>NTDB_id=1112436 KHN79_RS11040 WP_182008844.1 2452072..2452530(+) (pilA) [Vibrio sp. B1FLJ16]
MKPVKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAFTVENGLFPDGSTTDQTPTA
LGIPSMHLGSVSFTGQSTDGGNVAFTFSTTASAGVSSLVSGKKLTLTRAASTGGWSCSSADLDAELLPKTCK
MKPVKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAFTVENGLFPDGSTTDQTPTA
LGIPSMHLGSVSFTGQSTDGGNVAFTFSTTASAGVSSLVSGKKLTLTRAASTGGWSCSSADLDAELLPKTCK
Nucleotide
Download Length: 459 bp
>NTDB_id=1112436 KHN79_RS11040 WP_182008844.1 2452072..2452530(+) (pilA) [Vibrio sp. B1FLJ16]
ATGAAACCAGTTAAACAAAAAAAACAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCAGTGATTGGTGTTTT
AGCAGCGATTGCTATGCCACAGTATCAGAAATACGTAGCTAAAAGCGAAGTCGCATCAGTATTAGCAACCCTGACTGGCG
CTAAAACTAATGTAGAGGCATTTACAGTAGAAAACGGACTATTTCCTGATGGTTCAACAACTGATCAAACACCTACAGCT
TTAGGGATTCCAAGTATGCACTTAGGAAGCGTCTCATTTACAGGCCAAAGTACAGATGGAGGAAATGTAGCTTTTACATT
CTCAACTACAGCAAGTGCAGGTGTAAGCTCGCTTGTGTCAGGTAAAAAACTTACGTTAACTAGAGCAGCCTCAACTGGTG
GCTGGTCATGCTCTTCAGCAGATTTAGATGCAGAGCTTTTGCCTAAAACTTGTAAATAA
ATGAAACCAGTTAAACAAAAAAAACAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCAGTGATTGGTGTTTT
AGCAGCGATTGCTATGCCACAGTATCAGAAATACGTAGCTAAAAGCGAAGTCGCATCAGTATTAGCAACCCTGACTGGCG
CTAAAACTAATGTAGAGGCATTTACAGTAGAAAACGGACTATTTCCTGATGGTTCAACAACTGATCAAACACCTACAGCT
TTAGGGATTCCAAGTATGCACTTAGGAAGCGTCTCATTTACAGGCCAAAGTACAGATGGAGGAAATGTAGCTTTTACATT
CTCAACTACAGCAAGTGCAGGTGTAAGCTCGCTTGTGTCAGGTAAAAAACTTACGTTAACTAGAGCAGCCTCAACTGGTG
GCTGGTCATGCTCTTCAGCAGATTTAGATGCAGAGCTTTTGCCTAAAACTTGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.134 |
100 |
0.487 |
| pilA | Vibrio cholerae strain A1552 |
47.134 |
100 |
0.487 |
| pilA | Vibrio cholerae C6706 |
47.134 |
100 |
0.487 |
| pilA | Pseudomonas aeruginosa PAK |
44.371 |
99.342 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
45.985 |
90.132 |
0.414 |
| pilA | Acinetobacter baumannii strain A118 |
41.216 |
97.368 |
0.401 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.397 |
99.342 |
0.401 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.474 |
100 |
0.395 |