Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHN79_RS11050 Genome accession   NZ_HG992749
Coordinates   2454246..2455469 (+) Length   407 a.a.
NCBI ID   WP_182008846.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2449246..2460469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS11030 ampD 2449983..2450527 (-) 545 Protein_2147 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KHN79_RS11035 (ACOMICROBIO_LOCUS1625) nadC 2450913..2451800 (+) 888 WP_182008843.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KHN79_RS11040 (ACOMICROBIO_LOCUS1626) pilA 2452072..2452530 (+) 459 WP_182008844.1 pilin Machinery gene
  KHN79_RS11045 (ACOMICROBIO_LOCUS1627) pilB 2452530..2454215 (+) 1686 WP_182008845.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN79_RS11050 (ACOMICROBIO_LOCUS1628) pilC 2454246..2455469 (+) 1224 WP_182008846.1 type II secretion system F family protein Machinery gene
  KHN79_RS11055 (ACOMICROBIO_LOCUS1629) pilD 2455540..2456409 (+) 870 WP_182008847.1 A24 family peptidase Machinery gene
  KHN79_RS11060 (ACOMICROBIO_LOCUS1630) coaE 2456410..2457024 (+) 615 WP_182008848.1 dephospho-CoA kinase -
  KHN79_RS11065 (ACOMICROBIO_LOCUS1631) zapD 2457052..2457792 (+) 741 WP_182008849.1 cell division protein ZapD -
  KHN79_RS11070 (ACOMICROBIO_FLGHMIGD_02242) yacG 2457897..2458091 (+) 195 WP_014232956.1 DNA gyrase inhibitor YacG -
  KHN79_RS11075 (ACOMICROBIO_LOCUS1632) rplS 2458462..2458815 (-) 354 WP_145532528.1 50S ribosomal protein L19 -
  KHN79_RS11080 (ACOMICROBIO_LOCUS1633) trmD 2458857..2459618 (-) 762 WP_182008850.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KHN79_RS11085 (ACOMICROBIO_LOCUS1634) rimM 2459646..2460194 (-) 549 WP_182008851.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45162.43 Da        Isoelectric Point: 10.2401

>NTDB_id=1112438 KHN79_RS11050 WP_182008846.1 2454246..2455469(+) (pilC) [Vibrio sp. B1FLJ16]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKGSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVMALKLVSNNHKKAEMKSTLMSVTRAVEAGTPMSKAMRTASNHFDALYTDLIATGEQSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVILVALGVSYLMLTKVIPEFEKMFSGFGADLPWFTRQVLDLSDWMQNWGSFIGLGALSLIISA
RIMVKRSDSFRLMMDRMLLKIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNMHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1112438 KHN79_RS11050 WP_182008846.1 2454246..2455469(+) (pilC) [Vibrio sp. B1FLJ16]
ATGAAAACCACTACCCCACAACTTAAAAACTTCCGTTGGAAAGGCATTAACAGCTCAGGTAAAAAAACCTCCGGTCAAAC
TCTCGCCATGAGTGAAATCGAAGTTCGTGAACGTTTAGATGCCCAGCATATAAAAATCAAAAAGCTCAAGAAGGGCAGCA
TTTCCTTCTTAACCAAACTAAGCCACCGCGTAAAAGGCAAAGACATCACCGTTTTTACCCGCCAGATCTCCACCATGCTG
GTGACTGGAGTGCCATTAGTTATGGCTTTGAAGCTGGTTTCCAACAACCATAAAAAAGCCGAGATGAAATCGACATTAAT
GAGCGTTACTCGCGCGGTGGAAGCAGGTACGCCGATGTCAAAGGCAATGCGCACAGCCAGTAACCACTTTGATGCTCTCT
ATACGGATCTCATTGCGACAGGTGAACAATCGGGGAACCTTGCCGAAGTATTTGAACGACTGGCCACCTACCGGGAAAAG
AGCGAAGAACTTCGCGCTAAAGTGATCAAAGCCTTGATTTACCCGGCGATGGTTATCCTCGTCGCGCTTGGAGTGTCGTA
TCTGATGCTGACCAAAGTCATTCCTGAATTTGAAAAAATGTTCTCCGGCTTTGGTGCTGATTTACCGTGGTTTACCCGAC
AAGTGCTCGACTTATCGGACTGGATGCAAAACTGGGGATCGTTTATTGGACTAGGTGCACTGAGCTTAATTATCTCAGCT
CGCATCATGGTCAAGCGTTCAGATTCCTTCCGTTTAATGATGGATAGAATGTTATTGAAGATTCCCGTTTTAGGCGCAGT
ATTATCTAAAGCCGCCATTGCTAAATTCAGCCGCACGCTTGCCACCAGCTTTAGCGCCGGTATTCCGATATTGACCAGTC
TAAAAACTACATCGAAAACCTCAGGCAACATGCATTACCAACTGGCGGTTGAAGAAGTCTACCGTGACACTGCCGCAGGT
ATGCCGATGTATGTGGCGATGCGCAACTGTGATGTGTTCCCCGAGCTGGTACTGCAAATGGTGATGATCGGCGAAGAGTC
AGGGCGGCTAGATGACATGCTAAATAAAGTCGCGACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACCTGAGTA
AAATTCTCGAACCATTAATTATCGTCTTTTTAGGGGTCGTCGTTGGTGGCCTCGTCACTGCTATGTACCTGCCAATCTTT
AACTTAATGAGCGTATTAGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.732

100

0.867
  pilC Vibrio cholerae strain A1552

73.58

99.509

0.732
  pilC Acinetobacter baylyi ADP1

42

98.28

0.413
  pilC Acinetobacter baumannii D1279779

41.5

98.28

0.408
  pilC Legionella pneumophila strain ERS1305867

40.786

100

0.408
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria gonorrhoeae MS11

40.25

98.28

0.396
  pilG Neisseria meningitidis 44/76-A

40

98.28

0.393

Multiple sequence alignment