Detailed information NTG1112439

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHN79_RS11055
• Genome accession: NZ_HG992749
• Coordinates: 2455540..2456409 (+)
• Length: 289 a.a.
• NCBI ID: WP_182008847.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FLJ16
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2450540..2461409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN79_RS11035 (ACOMICROBIO_LOCUS1625)	nadC	2450913..2451800 (+)	888	WP_182008843.1	carboxylating nicotinate-nucleotide diphosphorylase	-
KHN79_RS11040 (ACOMICROBIO_LOCUS1626)	pilA	2452072..2452530 (+)	459	WP_182008844.1	pilin	Machinery gene
KHN79_RS11045 (ACOMICROBIO_LOCUS1627)	pilB	2452530..2454215 (+)	1686	WP_182008845.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHN79_RS11050 (ACOMICROBIO_LOCUS1628)	pilC	2454246..2455469 (+)	1224	WP_182008846.1	type II secretion system F family protein	Machinery gene
KHN79_RS11055 (ACOMICROBIO_LOCUS1629)	pilD	2455540..2456409 (+)	870	WP_182008847.1	A24 family peptidase	Machinery gene
KHN79_RS11060 (ACOMICROBIO_LOCUS1630)	coaE	2456410..2457024 (+)	615	WP_182008848.1	dephospho-CoA kinase	-
KHN79_RS11065 (ACOMICROBIO_LOCUS1631)	zapD	2457052..2457792 (+)	741	WP_182008849.1	cell division protein ZapD	-
KHN79_RS11070 (ACOMICROBIO_FLGHMIGD_02242)	yacG	2457897..2458091 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
KHN79_RS11075 (ACOMICROBIO_LOCUS1632)	rplS	2458462..2458815 (-)	354	WP_145532528.1	50S ribosomal protein L19	-
KHN79_RS11080 (ACOMICROBIO_LOCUS1633)	trmD	2458857..2459618 (-)	762	WP_182008850.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
KHN79_RS11085 (ACOMICROBIO_LOCUS1634)	rimM	2459646..2460194 (-)	549	WP_182008851.1	ribosome maturation factor RimM	-
KHN79_RS11090 (ACOMICROBIO_LOCUS1635)	rpsP	2460224..2460472 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32314.49 Da
• Isoelectric Point: 7.0189

>NTDB_id=1112439 KHN79_RS11055 WP_182008847.1 2455540..2456409(+) (pilD) [Vibrio sp. B1FLJ16]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKMMELEWRRECAESFPEYNIEPPKEVLTLSVPRSSCQKCGIPIRII
DNIPVLSWLFLRGKCHNCSAPISSRYPLIELLTAACSGYVAFHFGFSYFTIALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALMGISPVTLQDSVIGAIAGYLCLWSVYWGFKLITGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILSWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=1112439 KHN79_RS11055 WP_182008847.1 2455540..2456409(+) (pilD) [Vibrio sp. B1FLJ16]
ATGGAAGTATTCCAGTATTACCCGTGGCTATTCGTAGTGTTTGCCGTGGTTTTTGGTTTGATTGTGGGAAGCTTTCTCAA
CGTCGTCATTTACCGACTGCCTAAAATGATGGAACTGGAATGGCGACGCGAATGTGCGGAGTCATTCCCAGAATACAACA
TAGAACCGCCAAAAGAGGTACTTACGTTAAGTGTACCCCGCTCTTCTTGCCAGAAATGCGGAATCCCTATTCGTATTATC
GATAACATTCCGGTACTCAGCTGGCTGTTCCTCAGAGGAAAATGCCATAACTGCAGCGCCCCCATCAGTTCACGATACCC
GCTGATCGAACTGCTGACAGCTGCCTGTTCCGGCTATGTGGCATTTCATTTTGGCTTTAGCTACTTCACCATTGCACTGA
TTTTTTTCACCTTTGTTCTGATAGCAGCAACCTTTATCGATCTGGATACGATGCTATTACCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCCCTAGCATTGATGGGAATAAGTCCTGTTACGCTGCAAGACTCTGTGATTGGTGCTATCGC
AGGCTACTTATGCCTTTGGTCGGTATATTGGGGCTTCAAGCTGATTACTGGTAAAGAAGGCATGGGTTACGGCGACTTTA
AACTGTTAGCCGCGCTAGGGGCCTGGCTAGGCTGGCAATCTTTACCTATGATCATTTTGCTTTCTTCTGTTGTAGGCGTC
ATATTTGGATTAGTTCAGCTACGATTGCAGAAAAAAGGAATCGAGAAGGCCTTTCCTTTTGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTGCTCTGGGGTGATCAGATTCTAAGCTGGTATTTCACATCCATTCTGGGAGCATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.889	99.654	0.886
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	53.791	95.848	0.516
pilD	Acinetobacter nosocomialis M2	53.43	95.848	0.512
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45