Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ACN076_RS09605 Genome accession   NZ_CP184836
Coordinates   1937124..1937519 (-) Length   131 a.a.
NCBI ID   WP_261058240.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1932124..1942519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS09580 (ACN076_09580) recX 1932672..1933448 (+) 777 WP_420789899.1 recombination regulator RecX -
  ACN076_RS09585 (ACN076_09585) - 1933537..1934070 (+) 534 WP_000775316.1 DUF402 domain-containing protein -
  ACN076_RS09590 (ACN076_09590) - 1934141..1934908 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  ACN076_RS09595 (ACN076_09595) groL 1935046..1936668 (-) 1623 WP_265528798.1 chaperonin GroEL -
  ACN076_RS09600 (ACN076_09600) groES 1936684..1936968 (-) 285 WP_033688179.1 co-chaperone GroES -
  ACN076_RS09605 (ACN076_09605) ssbB/cilA 1937124..1937519 (-) 396 WP_261058240.1 single-stranded DNA-binding protein Machinery gene
  ACN076_RS09610 (ACN076_09610) - 1937597..1938358 (-) 762 WP_420789900.1 SDR family NAD(P)-dependent oxidoreductase -
  ACN076_RS09615 (ACN076_09615) ytpR 1938400..1939026 (-) 627 WP_261219644.1 YtpR family tRNA-binding protein -
  ACN076_RS09620 (ACN076_09620) - 1939042..1939359 (-) 318 WP_000615778.1 thioredoxin family protein -
  ACN076_RS09625 (ACN076_09625) - 1939356..1939655 (-) 300 WP_049502014.1 DUF4651 domain-containing protein -
  ACN076_RS09630 (ACN076_09630) - 1939905..1940978 (-) 1074 WP_420789901.1 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14889.82 Da        Isoelectric Point: 5.9409

>NTDB_id=1111473 ACN076_RS09605 WP_261058240.1 1937124..1937519(-) (ssbB/cilA) [Streptococcus sp. K0074]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAIRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1111473 ACN076_RS09605 WP_261058240.1 1937124..1937519(-) (ssbB/cilA) [Streptococcus sp. K0074]
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
TCGAGCGACTATTGCAGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCCGAAACTTTGGCAAGCTACGCAACAAAAGGAAGTCTCATTTCAGTGGATGGAGAACTTCGTACCCGT
CGTTTTGAGAAAAATGGCCAGATGAACTACGTGACAGAAGTACTTGTCACAGGATTTCAACTATTGGAAAGTCGTGCTCA
ACGTGCCATTCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCCTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment