Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN079_RS24690 Genome accession   NZ_CP184478
Coordinates   5504745..5505962 (+) Length   405 a.a.
NCBI ID   WP_420232243.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5499745..5510962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS24675 (ACN079_24675) - 5501774..5502127 (-) 354 WP_420232240.1 BON domain-containing protein -
  ACN079_RS24680 (ACN079_24680) pilA 5502399..5502818 (-) 420 WP_420232241.1 pilin Machinery gene
  ACN079_RS24685 (ACN079_24685) pilB 5503042..5504742 (+) 1701 WP_420232242.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN079_RS24690 (ACN079_24690) pilC 5504745..5505962 (+) 1218 WP_420232243.1 type II secretion system F family protein Machinery gene
  ACN079_RS24695 (ACN079_24695) pilD 5505964..5506833 (+) 870 WP_420232244.1 prepilin peptidase Machinery gene
  ACN079_RS24700 (ACN079_24700) coaE 5506833..5507456 (+) 624 WP_420232245.1 dephospho-CoA kinase -
  ACN079_RS24705 (ACN079_24705) yacG 5507453..5507653 (+) 201 WP_058542677.1 DNA gyrase inhibitor YacG -
  ACN079_RS24710 (ACN079_24710) - 5507800..5508015 (-) 216 WP_210640988.1 hypothetical protein -
  ACN079_RS24715 (ACN079_24715) - 5508079..5508765 (-) 687 WP_420232246.1 energy-coupling factor ABC transporter permease -
  ACN079_RS24720 (ACN079_24720) - 5508909..5509535 (+) 627 WP_245140946.1 DUF1780 domain-containing protein -
  ACN079_RS24725 (ACN079_24725) - 5509532..5510059 (+) 528 WP_420232247.1 MOSC domain-containing protein -
  ACN079_RS24730 (ACN079_24730) - 5510112..5510285 (+) 174 WP_003185543.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44342.07 Da        Isoelectric Point: 10.0329

>NTDB_id=1108432 ACN079_RS24690 WP_420232243.1 5504745..5505962(+) (pilC) [Pseudomonas sp. ABY48]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINAQKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQQWWWMLLGGLAGAFFGVK
YALRRSERFRDWRDKWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAVQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1108432 ACN079_RS24690 WP_420232243.1 5504745..5505962(+) (pilC) [Pseudomonas sp. ABY48]
ATGGCGGTCAAGGCAGTCAAAACCGATGTTTACACTTGGGAAGGCAAGGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGCCAGAGCCCGGCCCTGGTCAAGGCACAGTTGCGCAAGCAAGGCATCAATGCGCAGAAGGTGCGCAAGAAATCCA
CGTCGATCTTCAGCAAGGGCAAGCGCATCAAGCCGCTGGATATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCTGGCGTGCCGCTGTTGCAGGCGTTCGACATCATTGGCGAAGGCTTCGACAACCCCAACATGCGCAAGCTGGTGGACGA
GGTGAAGCAGGAAGTGGCCGCCGGCAACAGCTTCGCTGCGGCGCTGCGCAAGTGCCCGCAATATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAACAGGCCGGCGCCTTGGACACGCTGCTCGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGACGGCGGTGATACTCGTCGCAGCGGTGGTCACCGGCAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTGTTCTCCGGGTTCGGGGCGCAACTGCCGGCCTTCACGGTGATGG
TCATCGGCCTGTCGGAATTCATGCAGCAATGGTGGTGGATGTTGCTTGGCGGGCTGGCAGGGGCTTTTTTTGGTGTGAAG
TACGCGCTCAGGCGTTCGGAGCGCTTTCGCGACTGGCGCGATAAATGGCTGCTCAAACTGCCGCTGATAGGCACCTTGAT
GTACAAGTCTGCGGTGGCTCGCTATGCCCGCACGCTCTCGACGACATTCGCCGCTGGCGTACCGCTGGTCGAAGCCCTCG
ACTCGGTATCGGGCGCTACCGGTAACGTGGTATTCAAGCGCGCCGTGCAGCGCATCCGCCAAGACGTCTCGACCGGCATG
CAGCTGAATTTCTCCATGCGTGCCTCAGGGATCTTTCCGAACCTGGCGGTCCAGATGACCGCCATCGGCGAGGAATCCGG
TGCACTGGACGACATGCTCGACAAGGTGGCGAGTTTTTATGAGGCCGAGGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTCGTCGTCGGTGGCCTGGTGGTTGCCATGTACTTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baylyi ADP1

60.05

98.272

0.59
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilG Neisseria meningitidis 44/76-A

43.035

99.259

0.427
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Thermus thermophilus HB27

36.908

99.012

0.365

Multiple sequence alignment