Detailed information NTG1108433

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN079_RS24695
• Genome accession: NZ_CP184478
• Coordinates: 5505964..5506833 (+)
• Length: 289 a.a.
• NCBI ID: WP_420232244.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ABY48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5500964..5511833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN079_RS24675 (ACN079_24675)	-	5501774..5502127 (-)	354	WP_420232240.1	BON domain-containing protein	-
ACN079_RS24680 (ACN079_24680)	pilA	5502399..5502818 (-)	420	WP_420232241.1	pilin	Machinery gene
ACN079_RS24685 (ACN079_24685)	pilB	5503042..5504742 (+)	1701	WP_420232242.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN079_RS24690 (ACN079_24690)	pilC	5504745..5505962 (+)	1218	WP_420232243.1	type II secretion system F family protein	Machinery gene
ACN079_RS24695 (ACN079_24695)	pilD	5505964..5506833 (+)	870	WP_420232244.1	prepilin peptidase	Machinery gene
ACN079_RS24700 (ACN079_24700)	coaE	5506833..5507456 (+)	624	WP_420232245.1	dephospho-CoA kinase	-
ACN079_RS24705 (ACN079_24705)	yacG	5507453..5507653 (+)	201	WP_058542677.1	DNA gyrase inhibitor YacG	-
ACN079_RS24710 (ACN079_24710)	-	5507800..5508015 (-)	216	WP_210640988.1	hypothetical protein	-
ACN079_RS24715 (ACN079_24715)	-	5508079..5508765 (-)	687	WP_420232246.1	energy-coupling factor ABC transporter permease	-
ACN079_RS24720 (ACN079_24720)	-	5508909..5509535 (+)	627	WP_245140946.1	DUF1780 domain-containing protein	-
ACN079_RS24725 (ACN079_24725)	-	5509532..5510059 (+)	528	WP_420232247.1	MOSC domain-containing protein	-
ACN079_RS24730 (ACN079_24730)	-	5510112..5510285 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
ACN079_RS24735 (ACN079_24735)	-	5510355..5511653 (+)	1299	WP_420232248.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31887.04 Da
• Isoelectric Point: 8.0578

>NTDB_id=1108433 ACN079_RS24695 WP_420232244.1 5505964..5506833(+) (pilD) [Pseudomonas sp. ABY48]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLAWRLPKMLNREWRLQAHDLLGLPAEPPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTEVACGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=1108433 ACN079_RS24695 WP_420232244.1 5505964..5506833(+) (pilD) [Pseudomonas sp. ABY48]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCACTGCTCGGCCTGATCATCGGTAG
CTTCCTCAACGTGCTGGCGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAACCTCCTGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGTCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGTTGTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGTTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTGTCGGGGTGATTGTGCTGCGCTTGCGTGATGCTCCTGGGTCGACGCAAATCCCTTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	98.27	0.516
pilD	Vibrio campbellii strain DS40M4	50.877	98.616	0.502
pilD	Acinetobacter baumannii D1279779	48.214	96.886	0.467
pilD	Acinetobacter nosocomialis M2	48.214	96.886	0.467
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467