Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLKM1_RS12120 Genome accession   NZ_CP183903
Coordinates   2526679..2527908 (+) Length   409 a.a.
NCBI ID   WP_100329414.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2521679..2532908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS12075 rimP 2521932..2522456 (-) 525 WP_005094386.1 ribosome maturation factor RimP -
  ACLKM1_RS12105 secG 2523523..2523852 (-) 330 WP_005094388.1 preprotein translocase subunit SecG -
  ACLKM1_RS12110 tpiA 2523866..2524657 (-) 792 WP_005168944.1 triose-phosphate isomerase -
  ACLKM1_RS12115 pilB 2524935..2526647 (+) 1713 WP_005094394.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLKM1_RS12120 pilC 2526679..2527908 (+) 1230 WP_100329414.1 type II secretion system F family protein Machinery gene
  ACLKM1_RS12125 pilD 2527908..2528768 (+) 861 WP_074383650.1 prepilin peptidase Machinery gene
  ACLKM1_RS12130 coaE 2528770..2529369 (+) 600 WP_074383651.1 dephospho-CoA kinase -
  ACLKM1_RS12135 - 2529391..2530314 (-) 924 WP_005094400.1 DMT family transporter -
  ACLKM1_RS12140 rlmB 2530321..2531070 (-) 750 WP_005168959.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACLKM1_RS12145 - 2531207..2531530 (-) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44922.44 Da        Isoelectric Point: 9.9407

>NTDB_id=1107100 ACLKM1_RS12120 WP_100329414.1 2526679..2527908(+) (pilC) [Acinetobacter pseudolwoffii strain M5_NDM]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPARNMALAKVTLRKQGISIKTIREKKKNILEGLMKKRVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAII
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1107100 ACLKM1_RS12120 WP_100329414.1 2526679..2527908(+) (pilC) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
GGAATTGCCGGCGCGCAACATGGCACTGGCCAAAGTGACGCTCAGAAAACAGGGCATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAACATTCTCGAAGGCTTAATGAAAAAACGTGTCAGCACACTGGATATTACGATTTTTACCCGACAGCTCGCG
ACCATGATGAAAGCCGGCGTACCTTTAGTACAAGGCTTTGAAATTGTTGCAGAGGGTCTGGAGAATCCAGCCATGCGTGA
AGTCGTTCTGGGGATTAAAGGTGAGGTGGAAGGTGGTAATACCTTTGCCGGTGCACTGCGTAAATACCCGCAATACTTCG
ATAAACTATTTTGTTCACTGGTCGAATCGGGTGAACAATCCGGTGCGCTAGAAACCATGCTGGATCGGGTTGCGATCTAC
AAGGAAAAAAGTGAACTGCTCAAGCAAAAAATTAAAAAAGCCATGAAGTACCCGGCTGCGGTGGTCGTGGTCGCGCTGAT
TGTCACGATTATTCTAATGGTAAAAGTGGTCCCGGTTTTCCAGGATTTATTCTCTTCATTTGGTGCTGACTTACCGGCTT
TTACCAAAATGGTAGTCAATATGTCGGAATGGATGCAAAAATATTGGTTCCTGCTCATTATTGCCATTGGGGCCATCATT
ACGGCTTTTCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGCGATTTTCTGGATAAAGCAGCACTTAAAGCACCGATTTT
CGGTGATCTGGTGTATAAAGCGATTATTGCCCGTTATAGCCGTACCTTGGCCACCACTTTTGCAGCCGGTGTACCCTTGA
TTGATGCACTGGAATCCACTGCTGGCGCAACCAATAACGTGGTGTATGAAGATGCCGTCATGAAAATCCGCGAAGATGTT
GCCACTGGTCAGCAATTACAGTTTGCCATGCGGGTGACCAACAAGTTTCCATCTATGGCCGTGCAAATGGTCGCCATTGG
TGAGGAATCCGGTGCGTTAGATGCCATGCTGGATAAAGTTGCTACCCATTATGAAAATGAAGTCGACAATGCCGTAGACG
GTCTCACTTCCATGATGGAGCCCTTGATCATGGCTGTTCTCGGTGTACTTGTCGGTGGTCTGGTGATTGCCATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.904

97.066

0.523
  pilG Neisseria gonorrhoeae MS11

45.98

97.311

0.447
  pilG Neisseria meningitidis 44/76-A

45.98

97.311

0.447
  pilC Vibrio cholerae strain A1552

43.873

99.756

0.438
  pilC Vibrio campbellii strain DS40M4

42.065

97.066

0.408
  pilC Thermus thermophilus HB27

37.037

99.022

0.367

Multiple sequence alignment