Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM62G_RS07450 Genome accession   NZ_CP183808
Coordinates   1614248..1615465 (+) Length   405 a.a.
NCBI ID   WP_419736952.1    Uniprot ID   -
Organism   Pseudomonas sp. COR18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609248..1620465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM62G_RS07435 (ACM62G_07435) - 1610156..1611799 (-) 1644 WP_419736950.1 hypothetical protein -
  ACM62G_RS07440 (ACM62G_07440) pilA2 1611921..1612319 (-) 399 WP_419736951.1 pilin Machinery gene
  ACM62G_RS07445 (ACM62G_07445) pilB 1612544..1614244 (+) 1701 WP_054058987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM62G_RS07450 (ACM62G_07450) pilC 1614248..1615465 (+) 1218 WP_419736952.1 type II secretion system F family protein Machinery gene
  ACM62G_RS07455 (ACM62G_07455) pilD 1615469..1616341 (+) 873 WP_273824765.1 prepilin peptidase Machinery gene
  ACM62G_RS07460 (ACM62G_07460) coaE 1616338..1616961 (+) 624 WP_054058990.1 dephospho-CoA kinase -
  ACM62G_RS07465 (ACM62G_07465) yacG 1616958..1617161 (+) 204 WP_017905425.1 DNA gyrase inhibitor YacG -
  ACM62G_RS07470 (ACM62G_07470) - 1617173..1617388 (-) 216 WP_054058991.1 hypothetical protein -
  ACM62G_RS07475 (ACM62G_07475) - 1617456..1618154 (-) 699 WP_054058992.1 energy-coupling factor ABC transporter permease -
  ACM62G_RS07480 (ACM62G_07480) - 1618289..1618918 (+) 630 WP_054058993.1 DUF1780 domain-containing protein -
  ACM62G_RS07485 (ACM62G_07485) - 1619077..1619250 (+) 174 WP_273824769.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44104.81 Da        Isoelectric Point: 10.1603

>NTDB_id=1106215 ACM62G_RS07450 WP_419736952.1 1614248..1615465(+) (pilC) [Pseudomonas sp. COR18]
MATKAVKISTYAWEGTDKKGTKVSGELTGHNPALVKAQLRKQGINPGRVRKKGSSLFSKGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLVDDIKQEVAAGNSFATSLRKKPEYFDDLYCNLVDAGEQAGALESLLSRVATYKEKT
EALKAKIRKAMNYPIAVILVAIVVSGILLIKVVPQFQAIFAGFGAELPAFTLMVIGLSQILQDWWWVVTLGLGGGIYALI
RAHKKSERFRNWMDRTLLKVPIIGPIIYKSAVARFARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVNRVKQDVSTGM
QLNFSMRTTGVFPSMALQMTAIGEESGALDDMLDKVATYYETEVDNSVDSLTSLMEPLIMAVLGVIVGGLVIAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1106215 ACM62G_RS07450 WP_419736952.1 1614248..1615465(+) (pilC) [Pseudomonas sp. COR18]
ATGGCGACGAAAGCGGTAAAGATAAGCACCTACGCCTGGGAAGGCACCGACAAGAAAGGTACCAAGGTCTCCGGCGAACT
TACCGGCCACAACCCGGCGCTGGTCAAGGCGCAGTTGCGCAAGCAGGGGATCAACCCGGGCCGGGTTCGCAAGAAAGGCT
CGTCGCTGTTCAGCAAGGGCAAGCGTATCAAGCCCCTGGACATCGCCCTGTTCACCCGCCAGATGGCCACCATGATGAAA
GCCGGCGTGCCGTTGCTGCAGTCCTTCGACATCATCGCCGAAGGCTTCGACAACCCGAACATGCGCAAGCTGGTGGACGA
CATCAAGCAGGAAGTCGCCGCAGGCAACAGCTTCGCAACCTCGCTGCGCAAAAAACCGGAATATTTCGATGACCTGTACT
GCAACCTCGTCGATGCAGGCGAACAGGCTGGCGCCCTGGAAAGCCTGCTCTCACGGGTAGCGACCTACAAGGAAAAGACC
GAGGCGCTCAAGGCCAAGATCAGGAAGGCGATGAACTACCCGATCGCGGTGATTCTGGTGGCGATCGTTGTCTCGGGGAT
CCTGCTGATCAAGGTGGTGCCGCAATTCCAGGCGATCTTCGCCGGCTTCGGTGCGGAACTGCCGGCGTTCACGCTGATGG
TGATCGGTCTTTCGCAGATCCTGCAGGACTGGTGGTGGGTGGTGACCCTCGGTCTGGGCGGCGGCATCTATGCACTGATA
CGCGCTCACAAGAAGTCCGAGCGCTTTCGCAACTGGATGGACCGCACGCTCCTGAAAGTCCCGATCATCGGGCCGATCAT
CTACAAATCGGCCGTGGCCCGCTTTGCCCGTACCCTGTCGACCACCTTCGCCGCCGGCGTACCGCTGGTCGAAGCCCTGG
ACTCGGTGTCGGGCGCGACCGGCAACGTGGTGTTCAGGAACGCCGTCAACCGCGTCAAGCAGGACGTTTCCACCGGCATG
CAGTTGAACTTCTCCATGCGCACCACCGGGGTTTTCCCCAGCATGGCGCTGCAGATGACCGCCATCGGTGAAGAGTCCGG
CGCCCTCGACGACATGCTCGACAAGGTCGCGACCTACTACGAAACCGAAGTCGACAACAGCGTCGACAGCCTCACCAGCC
TGATGGAACCCCTCATCATGGCCGTGCTCGGCGTCATCGTCGGCGGCCTGGTGATCGCCATGTACCTGCCCATCTTCAAG
CTTGGCCAAGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.519

100

0.785
  pilC Acinetobacter baylyi ADP1

58.088

100

0.585
  pilC Acinetobacter baumannii D1279779

58.416

99.753

0.583
  pilC Legionella pneumophila strain ERS1305867

52.645

98.025

0.516
  pilG Neisseria meningitidis 44/76-A

43.921

99.506

0.437
  pilG Neisseria gonorrhoeae MS11

43.921

99.506

0.437
  pilC Vibrio campbellii strain DS40M4

42.579

100

0.432
  pilC Vibrio cholerae strain A1552

42.892

100

0.432
  pilC Thermus thermophilus HB27

37.75

98.765

0.373

Multiple sequence alignment