Detailed information NTG1106216

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACM62G_RS07455
• Genome accession: NZ_CP183808
• Coordinates: 1615469..1616341 (+)
• Length: 290 a.a.
• NCBI ID: WP_273824765.1
• Uniprot ID: -
• Organism: Pseudomonas sp. COR18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1610469..1621341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM62G_RS07440 (ACM62G_07440)	pilA2	1611921..1612319 (-)	399	WP_419736951.1	pilin	Machinery gene
ACM62G_RS07445 (ACM62G_07445)	pilB	1612544..1614244 (+)	1701	WP_054058987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACM62G_RS07450 (ACM62G_07450)	pilC	1614248..1615465 (+)	1218	WP_419736952.1	type II secretion system F family protein	Machinery gene
ACM62G_RS07455 (ACM62G_07455)	pilD	1615469..1616341 (+)	873	WP_273824765.1	prepilin peptidase	Machinery gene
ACM62G_RS07460 (ACM62G_07460)	coaE	1616338..1616961 (+)	624	WP_054058990.1	dephospho-CoA kinase	-
ACM62G_RS07465 (ACM62G_07465)	yacG	1616958..1617161 (+)	204	WP_017905425.1	DNA gyrase inhibitor YacG	-
ACM62G_RS07470 (ACM62G_07470)	-	1617173..1617388 (-)	216	WP_054058991.1	hypothetical protein	-
ACM62G_RS07475 (ACM62G_07475)	-	1617456..1618154 (-)	699	WP_054058992.1	energy-coupling factor ABC transporter permease	-
ACM62G_RS07480 (ACM62G_07480)	-	1618289..1618918 (+)	630	WP_054058993.1	DUF1780 domain-containing protein	-
ACM62G_RS07485 (ACM62G_07485)	-	1619077..1619250 (+)	174	WP_273824769.1	DUF3094 family protein	-
ACM62G_RS07490 (ACM62G_07490)	-	1619314..1620621 (+)	1308	WP_273824770.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31945.02 Da
• Isoelectric Point: 8.2659

>NTDB_id=1106216 ACM62G_RS07455 WP_273824765.1 1615469..1616341(+) (pilD) [Pseudomonas sp. COR18]
MPLPDFLASHPLAFVFCALILGLIVGSFLNVVVWRLPKMLERDWRAQAHDVLGLPQAEPGTTYNLLLPHSHCPHCNHRIR
AWENLPLLSYALLRGKCSSCKAPISKRYPLTELACGLLSAFIAWHFGFGWPAGLLLVLTWGLLAMSLIDADHQILPDVLV
LPLLWMGLIANHFAMFTSLGDALWGAVAGYLSLWSVYWVFKLLTGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLMLLRLRNAQTSTPIPFGPYLAIAGWIALLWGGQITTSYLHFAGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=1106216 ACM62G_RS07455 WP_273824765.1 1615469..1616341(+) (pilD) [Pseudomonas sp. COR18]
ATGCCCCTACCCGATTTCCTGGCCAGCCACCCGCTGGCCTTTGTTTTTTGCGCACTCATCCTCGGCCTGATCGTCGGCAG
CTTCCTCAATGTCGTCGTCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCGCCCAGGCCCACGATGTACTCGGCC
TGCCACAAGCCGAGCCCGGTACGACCTACAACCTGCTGCTGCCTCACTCCCACTGCCCACACTGCAACCATCGCATCCGC
GCCTGGGAAAACCTGCCCCTGCTCAGCTACGCCCTGCTGCGCGGCAAATGCTCAAGCTGCAAGGCACCGATCAGCAAGCG
CTACCCCCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCGTTCATCGCCTGGCACTTCGGTTTCGGCTGGCCCGCCGGTC
TGCTGCTGGTGCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGACCACCAGATACTGCCCGATGTGTTGGTA
TTGCCCCTGCTCTGGATGGGGCTGATCGCCAACCACTTCGCGATGTTCACGTCCTTGGGCGACGCGCTCTGGGGCGCGGT
CGCCGGCTACCTGAGCCTGTGGTCGGTGTACTGGGTCTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGATCCTGCTGTCATCTCTGGTGGGC
GCGGTACTGGGGCTGATGCTGTTGCGCCTGCGCAACGCCCAGACCTCGACGCCAATCCCGTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGCACTTTGCCGGCTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50	92.414	0.462
pilD	Acinetobacter nosocomialis M2	50	91.724	0.459
pilD	Neisseria gonorrhoeae MS11	50.196	87.931	0.441