Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAM39_RS10230 Genome accession   NZ_AP031590
Coordinates   2262487..2263710 (-) Length   407 a.a.
NCBI ID   WP_369627606.1    Uniprot ID   -
Organism   Moraxella sp. K02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257487..2268710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM39_RS10210 (MOXK02_19970) - 2258316..2259419 (+) 1104 WP_369627602.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ACAM39_RS10215 (MOXK02_19980) - 2259489..2260895 (+) 1407 WP_369627603.1 nicotinate phosphoribosyltransferase -
  ACAM39_RS10220 (MOXK02_19990) coaE 2260953..2261609 (-) 657 WP_369627604.1 dephospho-CoA kinase -
  ACAM39_RS10225 (MOXK02_20000) pilD 2261606..2262481 (-) 876 WP_369627605.1 A24 family peptidase Machinery gene
  ACAM39_RS10230 (MOXK02_20010) pilC 2262487..2263710 (-) 1224 WP_369627606.1 type II secretion system F family protein Machinery gene
  ACAM39_RS10235 (MOXK02_20020) pilB 2263767..2265473 (-) 1707 WP_369627607.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM39_RS10240 (MOXK02_20030) tpiA 2265931..2266785 (+) 855 WP_369627608.1 triose-phosphate isomerase -
  ACAM39_RS10245 (MOXK02_20040) secG 2266877..2267197 (+) 321 WP_036594931.1 preprotein translocase subunit SecG -
  ACAM39_RS10260 (MOXK02_20050) rimP 2267761..2268270 (+) 510 WP_007115081.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44883.92 Da        Isoelectric Point: 9.7937

>NTDB_id=110544 ACAM39_RS10230 WP_369627606.1 2262487..2263710(-) (pilC) [Moraxella sp. K02]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTRMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMVIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=110544 ACAM39_RS10230 WP_369627606.1 2262487..2263710(-) (pilC) [Moraxella sp. K02]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGTGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAGGCGCAACTACGCAAGCAAGGCATCAAAGTCAAGACGATTAAGAAAAAAC
CCAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCGGGCGTCCCCCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCGGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCCAGATATTTTGATGACCTAT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTGGAAACCATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTACTTGTTAAAGTAGTACCAGTGTTTGCTGATTTATTCAATTCATTTGGCGCAGAGTTACCCGCGTTTACCCGAA
TGGTAGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGTGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTGCCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCCCGCACCTTGTCTACCACTTTTGCGGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACTGCTGGGGCAACCAACAATGTGGTATTTTATAATGCCACGCAAAAAATCAAAGGTGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTCCCCAGTATGGTTATCCAAATGGTCGGTATTGGTGAGGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGACGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCGGTTTTGGGGGTGCTGGTAGGGGGTCTAGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.098

100

0.703
  pilC Acinetobacter baylyi ADP1

68.627

100

0.688
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilC Vibrio cholerae strain A1552

43.382

100

0.435
  pilG Neisseria gonorrhoeae MS11

44.192

97.297

0.43
  pilG Neisseria meningitidis 44/76-A

43.939

97.297

0.428
  pilC Vibrio campbellii strain DS40M4

41.75

98.28

0.41
  pilC Thermus thermophilus HB27

35.577

100

0.364

Multiple sequence alignment