Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACAM39_RS10225 Genome accession   NZ_AP031590
Coordinates   2261606..2262481 (-) Length   291 a.a.
NCBI ID   WP_369627605.1    Uniprot ID   -
Organism   Moraxella sp. K02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2256606..2267481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM39_RS10205 (MOXK02_19960) nfuA 2257400..2258017 (-) 618 WP_309577721.1 Fe-S biogenesis protein NfuA -
  ACAM39_RS10210 (MOXK02_19970) - 2258316..2259419 (+) 1104 WP_369627602.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ACAM39_RS10215 (MOXK02_19980) - 2259489..2260895 (+) 1407 WP_369627603.1 nicotinate phosphoribosyltransferase -
  ACAM39_RS10220 (MOXK02_19990) coaE 2260953..2261609 (-) 657 WP_369627604.1 dephospho-CoA kinase -
  ACAM39_RS10225 (MOXK02_20000) pilD 2261606..2262481 (-) 876 WP_369627605.1 A24 family peptidase Machinery gene
  ACAM39_RS10230 (MOXK02_20010) pilC 2262487..2263710 (-) 1224 WP_369627606.1 type II secretion system F family protein Machinery gene
  ACAM39_RS10235 (MOXK02_20020) pilB 2263767..2265473 (-) 1707 WP_369627607.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM39_RS10240 (MOXK02_20030) tpiA 2265931..2266785 (+) 855 WP_369627608.1 triose-phosphate isomerase -
  ACAM39_RS10245 (MOXK02_20040) secG 2266877..2267197 (+) 321 WP_036594931.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32231.78 Da        Isoelectric Point: 8.1673

>NTDB_id=110543 ACAM39_RS10225 WP_369627605.1 2261606..2262481(-) (pilD) [Moraxella sp. K02]
MALILDFVLLLQQSQWLTLIIVALLGLCVGSFLNVVIYRTPLMMEQQWKNECQLLLHPETIVDHHESITLSRPASRCPHC
GYSIRWFENMPVISWLLLKGKCSQCHHAIGYRYPLVEIITAILSVLVVMKFGVTWQALAGLALTWTLVALTGIDFDTQLL
PDRFTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLL
SAFVGSVVGVILMKRSGESKPFAFGPYIAIAGMIALLYGQPIMSWYLGKMS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=110543 ACAM39_RS10225 WP_369627605.1 2261606..2262481(-) (pilD) [Moraxella sp. K02]
ATGGCATTGATTCTAGATTTTGTATTATTATTACAGCAGTCGCAATGGCTGACGTTGATTATCGTAGCTTTATTGGGATT
ATGTGTGGGCAGTTTTCTCAATGTGGTAATTTATCGCACGCCTTTGATGATGGAGCAGCAGTGGAAGAACGAATGCCAGC
TATTGCTCCATCCAGAAACCATTGTTGACCATCATGAATCCATTACCTTAAGCCGTCCTGCTTCTCGTTGCCCGCATTGT
GGGTACTCAATACGTTGGTTTGAAAATATGCCTGTTATTAGCTGGCTACTGCTAAAAGGGAAATGTAGTCAGTGTCATCA
CGCCATTGGTTATCGTTATCCGCTTGTAGAAATCATCACCGCTATTTTATCTGTACTGGTTGTTATGAAATTTGGTGTTA
CTTGGCAAGCGCTGGCAGGATTAGCACTCACATGGACATTAGTGGCTTTGACAGGCATTGATTTTGATACCCAATTGTTG
CCTGACCGATTTACATTGCCGTTAGCGGGATTAGGCTTATTTGTCAATGCCTTTGGCTTGTTTGTCAGTCCCACAGCGGC
TATTTTTGGCTATGTGTTTGGGTTTTTATGCTTGTGGATTGTCTATCAACTGTTTTTGCTGATTACGGGCAAGCACGGGA
TGGGGCATGGCGATTTTAAATTATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCGTTAATTGTGCTTTTA
TCTGCGTTTGTCGGCTCGGTTGTGGGTGTAATATTGATGAAGCGCTCAGGTGAGAGTAAACCTTTTGCTTTTGGACCTTA
TATCGCGATTGCTGGCATGATCGCACTGTTGTATGGGCAACCAATAATGTCGTGGTATCTAGGCAAAATGTCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)

Type IV leader peptidase family (Peptidase_A24)

(142-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

65.056

92.44

0.601
  pilD Acinetobacter nosocomialis M2

65.056

92.44

0.601
  pilD Vibrio campbellii strain DS40M4

48.754

96.564

0.471
  pilD Vibrio cholerae strain A1552

48.905

94.158

0.46
  pilD Neisseria gonorrhoeae MS11

44.444

92.784

0.412

Multiple sequence alignment