Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACNSPE_RS25680 Genome accession   NZ_CP183326
Coordinates   5108105..5108464 (+) Length   119 a.a.
NCBI ID   WP_419393277.1    Uniprot ID   -
Organism   Cytobacillus praedii strain MM2025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5103105..5113464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSPE_RS25650 (ACNSPE_25650) - 5104333..5105157 (+) 825 WP_419393275.1 flagellar hook-basal body protein -
  ACNSPE_RS25655 (ACNSPE_25655) - 5105176..5106018 (+) 843 WP_057760235.1 flagellar hook-basal body protein -
  ACNSPE_RS25660 (ACNSPE_25660) - 5106032..5106304 (+) 273 WP_057760237.1 DNA-directed RNA polymerase subunit beta -
  ACNSPE_RS25665 (ACNSPE_25665) fabZ 5106445..5106867 (+) 423 WP_057760239.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNSPE_RS25670 (ACNSPE_25670) - 5107028..5107342 (+) 315 WP_419393276.1 hypothetical protein -
  ACNSPE_RS25675 (ACNSPE_25675) - 5107383..5107817 (-) 435 WP_057760244.1 YwpF family protein -
  ACNSPE_RS25680 (ACNSPE_25680) ssbB 5108105..5108464 (+) 360 WP_419393277.1 single-stranded DNA-binding protein Machinery gene
  ACNSPE_RS25685 (ACNSPE_25685) - 5108470..5108649 (+) 180 WP_419393278.1 hypothetical protein -
  ACNSPE_RS25690 (ACNSPE_25690) - 5108992..5111811 (-) 2820 WP_419394430.1 DEAD/DEAH box helicase -
  ACNSPE_RS25695 (ACNSPE_25695) - 5111804..5113420 (-) 1617 WP_419393279.1 SWIM zinc finger family protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13530.33 Da        Isoelectric Point: 9.7241

>NTDB_id=1105320 ACNSPE_RS25680 WP_419393277.1 5108105..5108464(+) (ssbB) [Cytobacillus praedii strain MM2025]
MINQVTLVGRLTKDPELKRTAEGTPVTNVTLAVNRQYRNQLGEIDADFVQCTLWRKVAENTSRYCRKGSLIGITGRIQTR
HYDNQAGKRVYVTEVWADSVKFLDQKKPDETYAPAAREG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=1105320 ACNSPE_RS25680 WP_419393277.1 5108105..5108464(+) (ssbB) [Cytobacillus praedii strain MM2025]
ATGATAAATCAAGTAACGCTCGTTGGCAGGCTAACAAAGGATCCTGAGCTAAAAAGGACAGCGGAAGGAACCCCCGTTAC
AAATGTGACCCTTGCTGTTAATCGTCAGTATCGAAATCAGCTAGGAGAAATTGATGCAGATTTCGTGCAATGCACACTCT
GGAGAAAAGTGGCAGAGAACACCTCAAGATACTGCCGGAAAGGCTCGCTAATTGGAATTACCGGCAGAATTCAGACAAGG
CATTATGATAATCAAGCAGGAAAACGCGTCTACGTAACTGAAGTGTGGGCAGACAGTGTCAAGTTTCTTGATCAAAAGAA
GCCGGATGAAACGTATGCGCCAGCAGCGAGGGAGGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

89.076

0.58
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.944

89.916

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

50.909

92.437

0.471
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

89.076

0.412
  ssbA Streptococcus mutans UA159

44.34

89.076

0.395
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

89.076

0.387
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

89.076

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

89.076

0.378
  ssbB/cilA Streptococcus pneumoniae D39

42.453

89.076

0.378
  ssbB/cilA Streptococcus pneumoniae R6

42.453

89.076

0.378
  ssbB/cilA Streptococcus mitis SK321

42.453

89.076

0.378
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

88.235

0.361

Multiple sequence alignment