Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACN08P_RS02050 | Genome accession | NZ_CP183280 |
| Coordinates | 418185..418574 (-) | Length | 129 a.a. |
| NCBI ID | WP_045068531.1 | Uniprot ID | A0A2T3MCZ5 |
| Organism | Photobacterium leiognathi subsp. mandapamensis strain Sr3.10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 413185..423574
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08P_RS02030 (ACN08P_02030) | coaE | 413661..414266 (-) | 606 | WP_318423279.1 | dephospho-CoA kinase | - |
| ACN08P_RS02035 (ACN08P_02035) | pilD | 414270..415139 (-) | 870 | WP_419237150.1 | prepilin peptidase | Machinery gene |
| ACN08P_RS02040 (ACN08P_02040) | pilC | 415228..416451 (-) | 1224 | WP_305464597.1 | type II secretion system F family protein | Machinery gene |
| ACN08P_RS02045 (ACN08P_02045) | pilB | 416496..418181 (-) | 1686 | WP_419237151.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACN08P_RS02050 (ACN08P_02050) | pilA | 418185..418574 (-) | 390 | WP_045068531.1 | pilin | Machinery gene |
| ACN08P_RS02055 (ACN08P_02055) | nadC | 418922..419809 (-) | 888 | WP_419238219.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACN08P_RS02060 (ACN08P_02060) | ampD | 420326..420871 (+) | 546 | WP_042117298.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACN08P_RS02065 (ACN08P_02065) | pdhR | 421193..421966 (+) | 774 | WP_107175991.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 12883.78 Da Isoelectric Point: 9.0498
>NTDB_id=1104955 ACN08P_RS02050 WP_045068531.1 418185..418574(-) (pilA) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.10]
MKKQQGFTLIELMIVVAVIGVLSAIAIPQYQKYVQKGALASALASATALKTNYEDYVAVSGAAPTQASDIGAVSFSLGTI
GVTSGAITANITKGGGKDNSIVLTRSSGGSWSCAISGAAASDVKLNGCP
MKKQQGFTLIELMIVVAVIGVLSAIAIPQYQKYVQKGALASALASATALKTNYEDYVAVSGAAPTQASDIGAVSFSLGTI
GVTSGAITANITKGGGKDNSIVLTRSSGGSWSCAISGAAASDVKLNGCP
Nucleotide
Download Length: 390 bp
>NTDB_id=1104955 ACN08P_RS02050 WP_045068531.1 418185..418574(-) (pilA) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.10]
ATGAAAAAACAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTGGCGGTTATCGGTGTGCTTTCGGCAATTGCTAT
TCCACAATATCAGAAATATGTACAAAAAGGAGCATTAGCTTCTGCGTTAGCTTCTGCAACTGCTTTAAAAACTAACTACG
AAGATTATGTTGCAGTTAGTGGTGCAGCACCAACACAAGCATCTGACATTGGAGCTGTATCTTTTAGCCTTGGAACAATT
GGAGTTACTTCAGGTGCTATTACAGCAAACATTACAAAAGGTGGCGGTAAAGATAATAGTATCGTTTTAACACGATCTTC
AGGCGGTAGCTGGTCATGTGCTATTAGCGGAGCAGCTGCATCAGATGTTAAACTAAACGGCTGTCCATAA
ATGAAAAAACAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTGGCGGTTATCGGTGTGCTTTCGGCAATTGCTAT
TCCACAATATCAGAAATATGTACAAAAAGGAGCATTAGCTTCTGCGTTAGCTTCTGCAACTGCTTTAAAAACTAACTACG
AAGATTATGTTGCAGTTAGTGGTGCAGCACCAACACAAGCATCTGACATTGGAGCTGTATCTTTTAGCCTTGGAACAATT
GGAGTTACTTCAGGTGCTATTACAGCAAACATTACAAAAGGTGGCGGTAAAGATAATAGTATCGTTTTAACACGATCTTC
AGGCGGTAGCTGGTCATGTGCTATTAGCGGAGCAGCTGCATCAGATGTTAAACTAAACGGCTGTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.366 |
100 |
0.488 |
| pilA | Vibrio cholerae strain A1552 |
44.366 |
100 |
0.488 |
| pilA | Vibrio cholerae C6706 |
44.366 |
100 |
0.488 |
| pilA | Pseudomonas aeruginosa PAK |
44.444 |
100 |
0.465 |
| pilA | Vibrio campbellii strain DS40M4 |
37.584 |
100 |
0.434 |
| pilA | Acinetobacter baumannii strain A118 |
44.8 |
96.899 |
0.434 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.13 |
100 |
0.419 |
| pilA2 | Legionella pneumophila str. Paris |
40.65 |
95.349 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.062 |
99.225 |
0.388 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.843 |
93.798 |
0.364 |