Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN08P_RS02040 Genome accession   NZ_CP183280
Coordinates   415228..416451 (-) Length   407 a.a.
NCBI ID   WP_305464597.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr3.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410228..421451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08P_RS02015 (ACN08P_02015) mutT 412212..412616 (-) 405 WP_305460309.1 8-oxo-dGTP diphosphatase MutT -
  ACN08P_RS02020 (ACN08P_02020) yacG 412621..412842 (-) 222 WP_008987916.1 DNA gyrase inhibitor YacG -
  ACN08P_RS02025 (ACN08P_02025) zapD 412850..413596 (-) 747 WP_042117295.1 cell division protein ZapD -
  ACN08P_RS02030 (ACN08P_02030) coaE 413661..414266 (-) 606 WP_318423279.1 dephospho-CoA kinase -
  ACN08P_RS02035 (ACN08P_02035) pilD 414270..415139 (-) 870 WP_419237150.1 prepilin peptidase Machinery gene
  ACN08P_RS02040 (ACN08P_02040) pilC 415228..416451 (-) 1224 WP_305464597.1 type II secretion system F family protein Machinery gene
  ACN08P_RS02045 (ACN08P_02045) pilB 416496..418181 (-) 1686 WP_419237151.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN08P_RS02050 (ACN08P_02050) pilA 418185..418574 (-) 390 WP_045068531.1 pilin Machinery gene
  ACN08P_RS02055 (ACN08P_02055) nadC 418922..419809 (-) 888 WP_419238219.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACN08P_RS02060 (ACN08P_02060) ampD 420326..420871 (+) 546 WP_042117298.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45146.22 Da        Isoelectric Point: 9.4899

>NTDB_id=1104953 ACN08P_RS02040 WP_305464597.1 415228..416451(-) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.10]
MSTAATKIRYYNWRGTNQAGRKVSGTTLGFQEQEVRQQLLDQKIIIKKIKKTSPSILAKMRDQMKGEDVTAVTRQLATMI
ESGVPVVQALQLMASSYNKAEMRATLLQITTQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREK
NEAMRKKVIKAMIYPSMVMLTAVLVTVMMLVFVIPQFAQIFSSFGAELPFFTQIVMHASDFLIAYGTYMAIGIASIVFLY
RYFYKKSDDFRYKSNKFVLKLPIFGDVLLKATIARFARTLATTFMAGIPLLSGIQSAGRTCGNLYIERAIEEVYESTAGG
MPLYLALRQSGVFPELMLQMVMIGEESGALDDMLNKMAQIYEADVDNTVDNLGQILEPFIIIILGGLIGGLLVAMYMPIF
TLMSVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1104953 ACN08P_RS02040 WP_305464597.1 415228..416451(-) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.10]
ATGAGTACTGCTGCTACTAAAATTCGCTATTACAACTGGCGTGGAACCAACCAAGCAGGGCGTAAAGTTTCAGGCACTAC
GCTAGGCTTTCAAGAACAAGAAGTTCGCCAACAGCTGTTAGACCAAAAAATTATTATAAAGAAAATAAAGAAAACCTCGC
CTTCGATTTTGGCAAAAATGCGCGACCAAATGAAAGGGGAAGATGTCACCGCAGTCACCCGCCAGCTTGCCACAATGATC
GAATCCGGTGTTCCCGTTGTTCAAGCACTTCAACTAATGGCAAGCAGTTATAACAAAGCTGAAATGCGCGCAACCTTATT
GCAAATCACCACCCAAGTGGAATCGGGCGCATCCCTTTCCAGTGCCATGCGCTCTAGCTCGCCACTATTTGATAAATTCT
TCTGTGATTTGGTGGCAACCGGTGAGCAAACTGGTCACCTCGGGCAAGTCTTTGCCCGTATTGCGGTTTACCGTGAAAAA
AACGAAGCAATGCGTAAAAAAGTCATCAAAGCCATGATTTATCCATCCATGGTTATGCTAACAGCAGTTCTGGTTACCGT
AATGATGCTGGTATTTGTTATCCCGCAATTTGCCCAGATTTTTTCAAGCTTTGGTGCTGAATTGCCTTTCTTTACCCAAA
TCGTCATGCATGCATCAGATTTTCTTATTGCCTATGGCACCTATATGGCAATAGGTATTGCATCAATTGTTTTTCTCTAC
CGTTATTTTTATAAGAAATCGGACGATTTCCGCTATAAATCCAATAAGTTTGTATTAAAACTGCCTATCTTTGGTGATGT
CTTACTCAAAGCCACCATCGCCCGTTTTGCCCGCACTCTAGCCACCACTTTTATGGCGGGTATTCCTCTTCTTTCAGGTA
TCCAATCAGCAGGGAGAACCTGTGGTAATTTATACATTGAAAGAGCCATTGAAGAAGTTTATGAAAGTACTGCTGGTGGT
ATGCCTTTGTATTTAGCCCTGCGTCAATCAGGCGTTTTTCCAGAGCTGATGCTGCAAATGGTGATGATCGGTGAAGAATC
CGGTGCGCTTGATGACATGCTCAATAAAATGGCGCAAATCTATGAAGCCGATGTCGATAATACCGTTGATAACCTTGGCC
AAATTTTAGAGCCTTTCATCATCATTATTCTGGGTGGCTTGATCGGTGGCTTACTGGTAGCGATGTATATGCCAATCTTC
ACCTTAATGAGCGTTATCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.68

99.754

0.545
  pilC Vibrio campbellii strain DS40M4

52.334

100

0.523
  pilC Acinetobacter baumannii D1279779

41.562

97.543

0.405
  pilG Neisseria meningitidis 44/76-A

40.199

99.017

0.398
  pilG Neisseria gonorrhoeae MS11

40.199

99.017

0.398
  pilC Pseudomonas stutzeri DSM 10701

39.409

99.754

0.393
  pilC Acinetobacter baylyi ADP1

40.05

97.543

0.391
  pilC Legionella pneumophila strain ERS1305867

38.636

97.297

0.376

Multiple sequence alignment