Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   ABXG87_RS09410 Genome accession   NZ_AP031488
Coordinates   1983893..1984834 (-) Length   313 a.a.
NCBI ID   WP_013991268.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978893..1989834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09370 (Ssa13956_17840) - 1978968..1980161 (-) 1194 WP_070838927.1 acetate kinase -
  ABXG87_RS09375 (Ssa13956_17850) comYH 1980218..1981174 (-) 957 WP_353551577.1 class I SAM-dependent methyltransferase Machinery gene
  ABXG87_RS09380 (Ssa13956_17860) comGG 1981219..1981536 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  ABXG87_RS09385 (Ssa13956_17870) comYF 1981514..1981951 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABXG87_RS09390 (Ssa13956_17880) comGE 1981938..1982168 (-) 231 WP_045769382.1 competence type IV pilus minor pilin ComGE -
  ABXG87_RS09395 (Ssa13956_17890) comYD 1982200..1982628 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABXG87_RS09400 (Ssa13956_17900) comYC 1982588..1982902 (-) 315 WP_171963490.1 competence type IV pilus major pilin ComGC Machinery gene
  ABXG87_RS09405 (Ssa13956_17910) comYB 1982911..1984011 (-) 1101 WP_118185904.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABXG87_RS09410 (Ssa13956_17920) comYA 1983893..1984834 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  ABXG87_RS09415 (Ssa13956_17930) - 1984914..1985276 (-) 363 WP_002887019.1 DUF1033 family protein -
  ABXG87_RS09420 (Ssa13956_17940) rpoC 1985432..1989070 (-) 3639 WP_002887020.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35226.26 Da        Isoelectric Point: 5.4492

>NTDB_id=109826 ABXG87_RS09410 WP_013991268.1 1983893..1984834(-) (comYA) [Streptococcus salivarius strain NBRC 13956]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGQSVSLRLSTVGDYRGLESLVIRVLHSERRELVYWNQGIQPIMDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDNLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSVAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFASENFQSHSSISWNQQLEGLVKQGYLTEGDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=109826 ABXG87_RS09410 WP_013991268.1 1983893..1984834(-) (comYA) [Streptococcus salivarius strain NBRC 13956]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTACGAGCTCTATATGCGAGTTGGCCAGGAGAGGAGATTAATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTAGGTTCCTGTGACTATGAT
TGTGGTGATGGTCAAAGTGTTTCTCTGCGTTTGTCTACCGTTGGGGATTATCGTGGCTTAGAAAGTTTAGTTATTCGTGT
TCTACATTCCGAACGTCGAGAATTAGTGTACTGGAATCAAGGAATCCAGCCTATTATGGATGCTTTGGATTATCGTGGCT
TATATCTCTTTGCAGGTCCCGTTGGTTCTGGAAAGACTACGCTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTGATTTCGATTGAGGATCCTGTGGAAATTAAACAGGATAATGTTTTGCAACTCCAGGTGAATCAAGCAATTGACAT
GACCTATGATAATTTGATTAAGCTATCACTGCGTCACCGCCCGGATGTTTTGATTATTGGAGAAATTCGAGATAAGGAGA
CTGCTCGAGCGGTTATTAGAGCTAGTCTGACGGGAGTGACTGTTCTTTCAACTATTCACGCAAAGAGTGTGGCAGGTGTT
TATGAGCGTCTTCTGGACCTTGGTGTAGATAAGTCTGAGTTGGATAATGCCCTTCAAGGGATTGCCTACATGCGTCTGAT
TAAGGGAGGAGGTGTGATTGATTTTGCCAGTGAAAATTTCCAAAGCCATTCGTCAATCAGCTGGAACCAACAGTTGGAAG
GCTTGGTTAAACAAGGATATCTCACGGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

65.176

100

0.652
  comYA Streptococcus mutans UA140

65.176

100

0.652
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.595

99.361

0.652
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

99.361

0.642
  comYA Streptococcus gordonii str. Challis substr. CH1

62.62

100

0.626
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.897

99.681

0.607
  comGA Lactococcus lactis subsp. cremoris KW2

51.447

99.361

0.511
  comGA Latilactobacillus sakei subsp. sakei 23K

41.697

86.581

0.361

Multiple sequence alignment