Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ABXG87_RS09375 Genome accession   NZ_AP031488
Coordinates   1980218..1981174 (-) Length   318 a.a.
NCBI ID   WP_353551577.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1975218..1986174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09345 (Ssa13956_17790) proC 1975756..1976526 (+) 771 WP_049529268.1 pyrroline-5-carboxylate reductase -
  ABXG87_RS09350 (Ssa13956_17800) - 1976553..1977215 (-) 663 WP_049529267.1 type II CAAX endopeptidase family protein -
  ABXG87_RS09355 (Ssa13956_17810) - 1977328..1977774 (-) 447 WP_353551574.1 CAAX protease -
  ABXG87_RS09360 (Ssa13956_17820) - 1977852..1978508 (-) 657 WP_353551575.1 type II CAAX endopeptidase family protein -
  ABXG87_RS09365 (Ssa13956_17830) - 1978520..1978717 (-) 198 WP_049553950.1 helix-turn-helix transcriptional regulator -
  ABXG87_RS09370 (Ssa13956_17840) - 1978968..1980161 (-) 1194 WP_070838927.1 acetate kinase -
  ABXG87_RS09375 (Ssa13956_17850) comYH 1980218..1981174 (-) 957 WP_353551577.1 class I SAM-dependent methyltransferase Machinery gene
  ABXG87_RS09380 (Ssa13956_17860) comGG 1981219..1981536 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  ABXG87_RS09385 (Ssa13956_17870) comYF 1981514..1981951 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABXG87_RS09390 (Ssa13956_17880) comGE 1981938..1982168 (-) 231 WP_045769382.1 competence type IV pilus minor pilin ComGE -
  ABXG87_RS09395 (Ssa13956_17890) comYD 1982200..1982628 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABXG87_RS09400 (Ssa13956_17900) comYC 1982588..1982902 (-) 315 WP_171963490.1 competence type IV pilus major pilin ComGC Machinery gene
  ABXG87_RS09405 (Ssa13956_17910) comYB 1982911..1984011 (-) 1101 WP_118185904.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABXG87_RS09410 (Ssa13956_17920) comYA 1983893..1984834 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  ABXG87_RS09415 (Ssa13956_17930) - 1984914..1985276 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35845.75 Da        Isoelectric Point: 4.3805

>NTDB_id=109821 ABXG87_RS09375 WP_353551577.1 1980218..1981174(-) (comYH) [Streptococcus salivarius strain NBRC 13956]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIANRFKVAATSEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEVAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=109821 ABXG87_RS09375 WP_353551577.1 1980218..1981174(-) (comYH) [Streptococcus salivarius strain NBRC 13956]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAGTTTACACCTGATGCTATTGGATTTATCATCCTCTACCTACTCGAAGGGTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAGACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATTGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCGCATATTCTCAAAGAGAGTGATGTTATTATCAGTGACTTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAATCGTTTCAAGGTTGCAGCAACTAGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCTGTTATCACCCTTCCAGAAGTAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.159

99.057

0.695
  comYH Streptococcus mutans UA140

70.159

99.057

0.695

Multiple sequence alignment