Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ABXG87_RS09405 Genome accession   NZ_AP031488
Coordinates   1982911..1984011 (-) Length   366 a.a.
NCBI ID   WP_118185904.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977911..1989011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09365 (Ssa13956_17830) - 1978520..1978717 (-) 198 WP_049553950.1 helix-turn-helix transcriptional regulator -
  ABXG87_RS09370 (Ssa13956_17840) - 1978968..1980161 (-) 1194 WP_070838927.1 acetate kinase -
  ABXG87_RS09375 (Ssa13956_17850) comYH 1980218..1981174 (-) 957 WP_353551577.1 class I SAM-dependent methyltransferase Machinery gene
  ABXG87_RS09380 (Ssa13956_17860) comGG 1981219..1981536 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  ABXG87_RS09385 (Ssa13956_17870) comYF 1981514..1981951 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABXG87_RS09390 (Ssa13956_17880) comGE 1981938..1982168 (-) 231 WP_045769382.1 competence type IV pilus minor pilin ComGE -
  ABXG87_RS09395 (Ssa13956_17890) comYD 1982200..1982628 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABXG87_RS09400 (Ssa13956_17900) comYC 1982588..1982902 (-) 315 WP_171963490.1 competence type IV pilus major pilin ComGC Machinery gene
  ABXG87_RS09405 (Ssa13956_17910) comYB 1982911..1984011 (-) 1101 WP_118185904.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABXG87_RS09410 (Ssa13956_17920) comYA 1983893..1984834 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  ABXG87_RS09415 (Ssa13956_17930) - 1984914..1985276 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41715.79 Da        Isoelectric Point: 10.2587

>NTDB_id=109825 ABXG87_RS09405 WP_118185904.1 1982911..1984011(-) (comYB) [Streptococcus salivarius strain NBRC 13956]
MPVKISKAIRQSAGTNSWKAWLNKDISRKGISKGKKLKINQQFKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGNGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=109825 ABXG87_RS09405 WP_118185904.1 1982911..1984011(-) (comYB) [Streptococcus salivarius strain NBRC 13956]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAATCAGCTGGAACCAACAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACGGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAATTTAAGGTTATTCAGCTCTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGTCAGTAGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTATCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAATTGTTAGAGGGGAATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTCTT
TTTTGTGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGTCAGCTCTTGTCTTTT
ATCGAAGAATGGCCAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGAGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCTCTAATGAAAGAGCAAAAATCAAAGCTTTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGATTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.102

93.716

0.516
  comYB Streptococcus mutans UA159

55.102

93.716

0.516
  comYB Streptococcus gordonii str. Challis substr. CH1

51.603

93.716

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

50.442

92.623

0.467
  comGB/cglB Streptococcus mitis SK321

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae Rx1

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae D39

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae R6

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae TIGR4

49.408

92.35

0.456
  comGB Lactococcus lactis subsp. cremoris KW2

44.706

92.896

0.415

Multiple sequence alignment