Detailed information NTG0109822

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ABXG87_RS09385
• Genome accession: NZ_AP031488
• Coordinates: 1981514..1981951 (-)
• Length: 145 a.a.
• NCBI ID: WP_045769383.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain NBRC 13956
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1976514..1986951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXG87_RS09350 (Ssa13956_17800)	-	1976553..1977215 (-)	663	WP_049529267.1	type II CAAX endopeptidase family protein	-
ABXG87_RS09355 (Ssa13956_17810)	-	1977328..1977774 (-)	447	WP_353551574.1	CAAX protease	-
ABXG87_RS09360 (Ssa13956_17820)	-	1977852..1978508 (-)	657	WP_353551575.1	type II CAAX endopeptidase family protein	-
ABXG87_RS09365 (Ssa13956_17830)	-	1978520..1978717 (-)	198	WP_049553950.1	helix-turn-helix transcriptional regulator	-
ABXG87_RS09370 (Ssa13956_17840)	-	1978968..1980161 (-)	1194	WP_070838927.1	acetate kinase	-
ABXG87_RS09375 (Ssa13956_17850)	comYH	1980218..1981174 (-)	957	WP_353551577.1	class I SAM-dependent methyltransferase	Machinery gene
ABXG87_RS09380 (Ssa13956_17860)	comGG	1981219..1981536 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
ABXG87_RS09385 (Ssa13956_17870)	comYF	1981514..1981951 (-)	438	WP_045769383.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABXG87_RS09390 (Ssa13956_17880)	comGE	1981938..1982168 (-)	231	WP_045769382.1	competence type IV pilus minor pilin ComGE	-
ABXG87_RS09395 (Ssa13956_17890)	comYD	1982200..1982628 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
ABXG87_RS09400 (Ssa13956_17900)	comYC	1982588..1982902 (-)	315	WP_171963490.1	competence type IV pilus major pilin ComGC	Machinery gene
ABXG87_RS09405 (Ssa13956_17910)	comYB	1982911..1984011 (-)	1101	WP_118185904.1	competence type IV pilus assembly protein ComGB	Machinery gene
ABXG87_RS09410 (Ssa13956_17920)	comYA	1983893..1984834 (-)	942	WP_013991268.1	competence type IV pilus ATPase ComGA	Machinery gene
ABXG87_RS09415 (Ssa13956_17930)	-	1984914..1985276 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16182.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=109822 ABXG87_RS09385 WP_045769383.1 1981514..1981951(-) (comYF) [Streptococcus salivarius strain NBRC 13956]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=109822 ABXG87_RS09385 WP_045769383.1 1981514..1981951(-) (comYF) [Streptococcus salivarius strain NBRC 13956]
ATGTCTCTCAATAGTAAGGTTCGCGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGACTGACTACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGTTGTCAGTTGGTAAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACCTGGCTTTTGGACTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAAGCTAGTACAATTAGCCAAAATAACCAGATAGTCACCATACAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae D39	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae R6	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50	97.931	0.49
comGF/cglF	Streptococcus mitis SK321	47.222	99.31	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.222	99.31	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434