Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM3H0_RS04330 Genome accession   NZ_CP180685
Coordinates   809498..809914 (-) Length   138 a.a.
NCBI ID   WP_000609374.1    Uniprot ID   A0AAW6XS84
Organism   Streptococcus agalactiae strain M14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 804498..814914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS04265 (ACM3H0_04265) - 805054..805488 (-) 435 WP_000142570.1 ArpU family phage packaging/lysis transcriptional regulator -
  ACM3H0_RS04270 (ACM3H0_04270) - 805879..806145 (-) 267 WP_000660741.1 hypothetical protein -
  ACM3H0_RS04275 (ACM3H0_04275) - 806142..806336 (-) 195 WP_000221696.1 hypothetical protein -
  ACM3H0_RS04280 (ACM3H0_04280) - 806524..806823 (-) 300 WP_001105090.1 hypothetical protein -
  ACM3H0_RS04285 (ACM3H0_04285) - 806844..807356 (-) 513 WP_001019149.1 DUF1642 domain-containing protein -
  ACM3H0_RS04290 (ACM3H0_04290) - 807353..807496 (-) 144 WP_000564605.1 hypothetical protein -
  ACM3H0_RS04295 (ACM3H0_04295) - 807500..807769 (-) 270 WP_000139628.1 hypothetical protein -
  ACM3H0_RS04300 (ACM3H0_04300) - 807766..807930 (-) 165 WP_000159368.1 hypothetical protein -
  ACM3H0_RS04305 (ACM3H0_04305) - 807961..808200 (-) 240 WP_000150115.1 hypothetical protein -
  ACM3H0_RS04310 (ACM3H0_04310) - 808184..808480 (-) 297 WP_000763914.1 nucleotide modification associated domain-containing protein -
  ACM3H0_RS04315 (ACM3H0_04315) - 808492..808836 (-) 345 WP_001004391.1 hypothetical protein -
  ACM3H0_RS04320 (ACM3H0_04320) - 808817..809305 (-) 489 WP_001009815.1 RusA family crossover junction endodeoxyribonuclease -
  ACM3H0_RS04325 (ACM3H0_04325) - 809295..809495 (-) 201 WP_000165748.1 hypothetical protein -
  ACM3H0_RS04330 (ACM3H0_04330) ssb 809498..809914 (-) 417 WP_000609374.1 single-stranded DNA-binding protein Machinery gene
  ACM3H0_RS04335 (ACM3H0_04335) - 809907..810581 (-) 675 WP_000063051.1 ERF family protein -
  ACM3H0_RS04340 (ACM3H0_04340) - 810582..811064 (-) 483 WP_000323862.1 siphovirus Gp157 family protein -
  ACM3H0_RS04345 (ACM3H0_04345) - 811065..811226 (-) 162 WP_001288192.1 hypothetical protein -
  ACM3H0_RS04350 (ACM3H0_04350) - 811229..811483 (-) 255 WP_000229416.1 hypothetical protein -
  ACM3H0_RS04355 (ACM3H0_04355) - 811470..811745 (-) 276 WP_000431576.1 hypothetical protein -
  ACM3H0_RS04360 (ACM3H0_04360) - 811735..811881 (-) 147 WP_000424131.1 hypothetical protein -
  ACM3H0_RS04365 (ACM3H0_04365) - 811881..812723 (-) 843 WP_000863936.1 ATP-binding protein -
  ACM3H0_RS04370 (ACM3H0_04370) - 812733..813635 (-) 903 WP_000057637.1 conserved phage C-terminal domain-containing protein -
  ACM3H0_RS04375 (ACM3H0_04375) - 813751..814191 (-) 441 WP_000861097.1 hypothetical protein -
  ACM3H0_RS04380 (ACM3H0_04380) - 814368..814538 (-) 171 WP_017644253.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15671.37 Da        Isoelectric Point: 6.7196

>NTDB_id=1097407 ACM3H0_RS04330 WP_000609374.1 809498..809914(-) (ssb) [Streptococcus agalactiae strain M14]
MINNIVLVGRMTKDAELRHTPSQVAVATFTLAVNRRFKEQNGERETDFINCVIWRQSAENLANWAKKGTLIGITGHIQTR
NYENQQGQRIYVTEVVAENFQLLESRNSQQQTNQSGNSSNSHFGNANKMDISDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=1097407 ACM3H0_RS04330 WP_000609374.1 809498..809914(-) (ssb) [Streptococcus agalactiae strain M14]
ATGATTAATAATATTGTACTTGTAGGTCGCATGACCAAGGATGCCGAACTTCGTCACACGCCAAGTCAAGTAGCTGTAGC
TACGTTTACACTTGCAGTTAACCGCAGATTCAAAGAGCAAAACGGAGAGCGAGAGACGGACTTCATTAATTGTGTTATCT
GGCGACAATCTGCTGAAAATCTAGCAAACTGGGCTAAAAAAGGGACTTTAATCGGTATCACAGGGCACATTCAGACACGC
AATTACGAAAATCAGCAAGGGCAACGTATCTATGTAACAGAAGTTGTTGCGGAAAATTTCCAATTATTAGAAAGTCGCAA
TAGCCAACAACAGACTAATCAAAGCGGCAATAGTTCTAATTCTCATTTTGGCAATGCCAACAAAATGGATATTTCAGATG
ATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.659
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.203

100

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.203

100

0.442
  ssbB/cilA Streptococcus pneumoniae Rx1

43.478

100

0.435
  ssbB/cilA Streptococcus mitis NCTC 12261

43.478

100

0.435
  ssbB/cilA Streptococcus pneumoniae D39

43.478

100

0.435
  ssbB/cilA Streptococcus pneumoniae R6

43.478

100

0.435
  ssbB/cilA Streptococcus mitis SK321

43.478

100

0.435
  ssbA Streptococcus mutans UA159

41.304

100

0.413
  ssbB Bacillus subtilis subsp. subtilis str. 168

47.788

81.884

0.391
  ssb Glaesserella parasuis strain SC1401

28.814

100

0.37

Multiple sequence alignment