Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   ACL43R_RS00790 Genome accession   NZ_CP180647
Coordinates   159714..160019 (+) Length   101 a.a.
NCBI ID   WP_416037620.1    Uniprot ID   -
Organism   Lactococcus formosensis strain JAL11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154714..165019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL43R_RS00770 (ACL43R_00770) guaB 155822..157303 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  ACL43R_RS00775 (ACL43R_00775) rpsU 157428..157604 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  ACL43R_RS00780 (ACL43R_00780) comGA 157793..158737 (+) 945 Protein_141 competence type IV pilus ATPase ComGA -
  ACL43R_RS00785 (ACL43R_00785) comGB 158676..159695 (+) 1020 WP_275692263.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACL43R_RS00790 (ACL43R_00790) comYC 159714..160019 (+) 306 WP_416037620.1 competence type IV pilus major pilin ComGC Machinery gene
  ACL43R_RS00795 (ACL43R_00795) comGD 160006..160410 (+) 405 WP_276532604.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACL43R_RS00800 (ACL43R_00800) comGE 160442..160675 (+) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  ACL43R_RS00805 (ACL43R_00805) comGF 160662..161096 (+) 435 WP_240246841.1 competence type IV pilus minor pilin ComGF -
  ACL43R_RS00810 (ACL43R_00810) - 161332..162177 (+) 846 WP_017368750.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  ACL43R_RS00815 (ACL43R_00815) - 162264..163133 (-) 870 WP_416037621.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11291.25 Da        Isoelectric Point: 10.0997

>NTDB_id=1097128 ACL43R_RS00790 WP_416037620.1 159714..160019(+) (comYC) [Lactococcus formosensis strain JAL11]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVSGGLITQK
QADSYNDYYTKNPNVKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1097128 ACL43R_RS00790 WP_416037620.1 159714..160019(+) (comYC) [Lactococcus formosensis strain JAL11]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGTAAAACGTAATGTCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

66.316

94.059

0.624
  comYC Streptococcus mutans UA159

66.316

94.059

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

62.626

98.02

0.614
  comGC/cglC Streptococcus pneumoniae D39

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae Rx1

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae R6

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

58.586

98.02

0.574
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396

Multiple sequence alignment