Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | ACL43R_RS00795 | Genome accession | NZ_CP180647 |
| Coordinates | 160006..160410 (+) | Length | 134 a.a. |
| NCBI ID | WP_276532604.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis strain JAL11 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 155006..165410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACL43R_RS00770 (ACL43R_00770) | guaB | 155822..157303 (+) | 1482 | WP_003133714.1 | IMP dehydrogenase | - |
| ACL43R_RS00775 (ACL43R_00775) | rpsU | 157428..157604 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| ACL43R_RS00780 (ACL43R_00780) | comGA | 157793..158737 (+) | 945 | Protein_141 | competence type IV pilus ATPase ComGA | - |
| ACL43R_RS00785 (ACL43R_00785) | comGB | 158676..159695 (+) | 1020 | WP_275692263.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACL43R_RS00790 (ACL43R_00790) | comYC | 159714..160019 (+) | 306 | WP_416037620.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACL43R_RS00795 (ACL43R_00795) | comGD | 160006..160410 (+) | 405 | WP_276532604.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACL43R_RS00800 (ACL43R_00800) | comGE | 160442..160675 (+) | 234 | WP_243416060.1 | competence type IV pilus minor pilin ComGE | - |
| ACL43R_RS00805 (ACL43R_00805) | comGF | 160662..161096 (+) | 435 | WP_240246841.1 | competence type IV pilus minor pilin ComGF | - |
| ACL43R_RS00810 (ACL43R_00810) | - | 161332..162177 (+) | 846 | WP_017368750.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| ACL43R_RS00815 (ACL43R_00815) | - | 162264..163133 (-) | 870 | WP_416037621.1 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15403.93 Da Isoelectric Point: 10.1981
>NTDB_id=1097129 ACL43R_RS00795 WP_276532604.1 160006..160410(+) (comGD) [Lactococcus formosensis strain JAL11]
MSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQEEML
KVPEEAEINDFSITFDQKSGNSSLQRITIFLPYQKKTISYQLEIGSGKYKKSIT
MSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQEEML
KVPEEAEINDFSITFDQKSGNSSLQRITIFLPYQKKTISYQLEIGSGKYKKSIT
Nucleotide
Download Length: 405 bp
>NTDB_id=1097129 ACL43R_RS00795 WP_276532604.1 160006..160410(+) (comGD) [Lactococcus formosensis strain JAL11]
ATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCTTTTTCTATTTTC
AAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGTATAAGGATACCC
AGCGCATGGCGGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAAGAAGAAATGTTG
AAAGTCCCAGAGGAGGCTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAATTCGAGCCTACAAAGAAT
CACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATAAGAAGAGCATCA
CTTGA
ATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCTTTTTCTATTTTC
AAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGTATAAGGATACCC
AGCGCATGGCGGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAAGAAGAAATGTTG
AAAGTCCCAGAGGAGGCTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAATTCGAGCCTACAAAGAAT
CACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATAAGAAGAGCATCA
CTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Lactococcus lactis subsp. cremoris KW2 |
49.254 |
100 |
0.493 |
| comYD | Streptococcus mutans UA140 |
40.602 |
99.254 |
0.403 |
| comYD | Streptococcus mutans UA159 |
40.602 |
99.254 |
0.403 |
| comGD/cglD | Streptococcus mitis SK321 |
39.535 |
96.269 |
0.381 |
| comGD/cglD | Streptococcus pneumoniae TIGR4 |
38.76 |
96.269 |
0.373 |
| comGD/cglD | Streptococcus mitis NCTC 12261 |
37.692 |
97.015 |
0.366 |