Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ABWV32_RS06345 | Genome accession | NZ_AP031467 |
| Coordinates | 1265752..1266063 (+) | Length | 103 a.a. |
| NCBI ID | WP_029625707.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain NBRC 115779 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1260752..1271063
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV32_RS06315 (SKB0123_12440) | - | 1261525..1261728 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| ABWV32_RS06320 (SKB0123_12450) | - | 1261725..1262711 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| ABWV32_RS06325 (SKB0123_12460) | - | 1262711..1263037 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ABWV32_RS06330 (SKB0123_12470) | - | 1263037..1263660 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| ABWV32_RS06335 (SKB0123_12480) | comGA | 1263718..1264692 (+) | 975 | WP_002453334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABWV32_RS06340 | comGB | 1264664..1265733 (+) | 1070 | Protein_1209 | competence type IV pilus assembly protein ComGB | - |
| ABWV32_RS06345 (SKB0123_12510) | comGC | 1265752..1266063 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABWV32_RS06350 (SKB0123_12520) | comGD | 1266041..1266490 (+) | 450 | WP_353304669.1 | competence type IV pilus minor pilin ComGD | - |
| ABWV32_RS06355 (SKB0123_12530) | - | 1266477..1266776 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| ABWV32_RS06360 (SKB0123_12540) | comGF | 1266694..1267185 (+) | 492 | WP_165766541.1 | competence type IV pilus minor pilin ComGF | - |
| ABWV32_RS06365 (SKB0123_12550) | - | 1267355..1267864 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| ABWV32_RS06370 (SKB0123_12560) | gcvT | 1268073..1269164 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABWV32_RS06375 (SKB0123_12570) | gcvPA | 1269183..1270529 (+) | 1347 | WP_002453328.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11345.43 Da Isoelectric Point: 9.7122
>NTDB_id=109682 ABWV32_RS06345 WP_029625707.1 1265752..1266063(+) (comGC) [Staphylococcus capitis strain NBRC 115779]
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=109682 ABWV32_RS06345 WP_029625707.1 1265752..1266063(+) (comGC) [Staphylococcus capitis strain NBRC 115779]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATAATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATAATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
86.408 |
100 |
0.864 |
| comGC | Staphylococcus aureus MW2 |
86.408 |
100 |
0.864 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.631 |
100 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.837 |
83.495 |
0.408 |
| comYC | Streptococcus mutans UA159 |
46.591 |
85.437 |
0.398 |
| comYC | Streptococcus mutans UA140 |
46.591 |
85.437 |
0.398 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
76.699 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |