Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ABWV32_RS06335 | Genome accession | NZ_AP031467 |
| Coordinates | 1263718..1264692 (+) | Length | 324 a.a. |
| NCBI ID | WP_002453334.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain NBRC 115779 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1258718..1269692
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV32_RS06300 (SKB0123_12410) | rpmG | 1259231..1259380 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| ABWV32_RS06305 (SKB0123_12420) | - | 1259529..1260080 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ABWV32_RS06310 (SKB0123_12430) | - | 1260081..1261544 (+) | 1464 | WP_353304668.1 | rhomboid family intramembrane serine protease | - |
| ABWV32_RS06315 (SKB0123_12440) | - | 1261525..1261728 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| ABWV32_RS06320 (SKB0123_12450) | - | 1261725..1262711 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| ABWV32_RS06325 (SKB0123_12460) | - | 1262711..1263037 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ABWV32_RS06330 (SKB0123_12470) | - | 1263037..1263660 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| ABWV32_RS06335 (SKB0123_12480) | comGA | 1263718..1264692 (+) | 975 | WP_002453334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABWV32_RS06340 | comGB | 1264664..1265733 (+) | 1070 | Protein_1209 | competence type IV pilus assembly protein ComGB | - |
| ABWV32_RS06345 (SKB0123_12510) | comGC | 1265752..1266063 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABWV32_RS06350 (SKB0123_12520) | comGD | 1266041..1266490 (+) | 450 | WP_353304669.1 | competence type IV pilus minor pilin ComGD | - |
| ABWV32_RS06355 (SKB0123_12530) | - | 1266477..1266776 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| ABWV32_RS06360 (SKB0123_12540) | comGF | 1266694..1267185 (+) | 492 | WP_165766541.1 | competence type IV pilus minor pilin ComGF | - |
| ABWV32_RS06365 (SKB0123_12550) | - | 1267355..1267864 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| ABWV32_RS06370 (SKB0123_12560) | gcvT | 1268073..1269164 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37118.93 Da Isoelectric Point: 7.7163
>NTDB_id=109681 ABWV32_RS06335 WP_002453334.1 1263718..1264692(+) (comGA) [Staphylococcus capitis strain NBRC 115779]
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=109681 ABWV32_RS06335 WP_002453334.1 1263718..1264692(+) (comGA) [Staphylococcus capitis strain NBRC 115779]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |