Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYH_RS27845 Genome accession   NZ_CP180479
Coordinates   6039481..6040698 (+) Length   405 a.a.
NCBI ID   WP_415765560.1    Uniprot ID   -
Organism   Pseudomonas sp. ZB1P45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6034481..6045698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYH_RS27825 - 6035890..6036186 (+) 297 WP_129441159.1 DUF2845 domain-containing protein -
  ACMXYH_RS27830 - 6036470..6036823 (-) 354 WP_129441155.1 BON domain-containing protein -
  ACMXYH_RS27835 pilA 6037142..6037552 (-) 411 WP_134422286.1 pilin Machinery gene
  ACMXYH_RS27840 pilB 6037778..6039478 (+) 1701 WP_415765559.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYH_RS27845 pilC 6039481..6040698 (+) 1218 WP_415765560.1 type II secretion system F family protein Machinery gene
  ACMXYH_RS27850 pilD 6040700..6041572 (+) 873 WP_415765561.1 prepilin peptidase Machinery gene
  ACMXYH_RS27855 coaE 6041569..6042192 (+) 624 WP_415765562.1 dephospho-CoA kinase -
  ACMXYH_RS27860 yacG 6042189..6042389 (+) 201 WP_134422296.1 DNA gyrase inhibitor YacG -
  ACMXYH_RS27865 - 6042393..6042608 (-) 216 WP_033054332.1 hypothetical protein -
  ACMXYH_RS27870 - 6042672..6043361 (-) 690 WP_415765564.1 energy-coupling factor ABC transporter permease -
  ACMXYH_RS27875 - 6044259..6044501 (+) 243 WP_134422302.1 DUF2790 domain-containing protein -
  ACMXYH_RS27880 - 6044522..6045424 (-) 903 WP_415765565.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44230.00 Da        Isoelectric Point: 9.7373

>NTDB_id=1096044 ACMXYH_RS27845 WP_415765560.1 6039481..6040698(+) (pilC) [Pseudomonas sp. ZB1P45]
MAVKAAKISVYAWEGTDRKGTKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLIDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSEFMQDWWWAMLGVLIAAIFGVR
HAFKTSQAFRDRMDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLSSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1096044 ACMXYH_RS27845 WP_415765560.1 6039481..6040698(+) (pilC) [Pseudomonas sp. ZB1P45]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTCTACGCCTGGGAAGGTACAGACCGCAAAGGCACCAAAGTGACGGGAGAGTT
GAGCGGTCAGAACCCGGCGTTGATCAAGGCCCAGTTGCGCAAGCAGGGCATCAACCCCGGCAAGGTGCGCAAGAAGTCCA
CCTCGATTTTCAACCTGGGCAAGCGCATCAAGGCCCAGGACATTGCTCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGTTGCAGTCCTTCGACATCATCGGTGAAGGCTTCGATAACCCGGCCATGCGCACACTGATCGACGA
GGTAAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCCGCTTCCCTGCGCAAAAAGCCTCAGTATTTCGATGAGCTGTACT
GCAACCTGGTAGATGCCGGCGAGCAGGCCGGTGCCCTCGATACCCTGCTGGATAGAGTGGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCACTGGCGGTGGTGTTTGTCGCGATCATTGTGACCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCGAATCGGTATTCAAAGGGTTTGGCGCCGAATTGCCAGCCTTCACGGTGATGG
TCATCGGCCTCTCGGAATTCATGCAGGACTGGTGGTGGGCGATGCTCGGCGTGCTGATCGCGGCCATCTTCGGTGTGCGC
CACGCCTTTAAAACGTCGCAAGCCTTTCGGGACCGAATGGACACCTGGCTGCTGAAATTGCCGCTAATTGGCACGCTGAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACGCTGTCGACTACCTTTGCGGCAGGTGTGCCACTGGTGGAAGCCCTGG
ATTCGGTGGCCGGCGCTACCGGCAACATCGTGTTCAAGCGCGCGGTGCTGCGCATCAAGCAGGATGTATCCACTGGCATG
CAACTGAACTTCTCCATGCGTGCCTCCGGTATCTTTCCGAATATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGATATGCTCGACAAGGTCGCGAGCTTCTATGAGGACGAAGTGGACAACATGGTCGATAACCTCAGCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGTCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

38.404

99.012

0.38

Multiple sequence alignment