Detailed information NTG1096045

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMXYH_RS27850
• Genome accession: NZ_CP180479
• Coordinates: 6040700..6041572 (+)
• Length: 290 a.a.
• NCBI ID: WP_415765561.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ZB1P45
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6035700..6046572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYH_RS27825	-	6035890..6036186 (+)	297	WP_129441159.1	DUF2845 domain-containing protein	-
ACMXYH_RS27830	-	6036470..6036823 (-)	354	WP_129441155.1	BON domain-containing protein	-
ACMXYH_RS27835	pilA	6037142..6037552 (-)	411	WP_134422286.1	pilin	Machinery gene
ACMXYH_RS27840	pilB	6037778..6039478 (+)	1701	WP_415765559.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMXYH_RS27845	pilC	6039481..6040698 (+)	1218	WP_415765560.1	type II secretion system F family protein	Machinery gene
ACMXYH_RS27850	pilD	6040700..6041572 (+)	873	WP_415765561.1	prepilin peptidase	Machinery gene
ACMXYH_RS27855	coaE	6041569..6042192 (+)	624	WP_415765562.1	dephospho-CoA kinase	-
ACMXYH_RS27860	yacG	6042189..6042389 (+)	201	WP_134422296.1	DNA gyrase inhibitor YacG	-
ACMXYH_RS27865	-	6042393..6042608 (-)	216	WP_033054332.1	hypothetical protein	-
ACMXYH_RS27870	-	6042672..6043361 (-)	690	WP_415765564.1	energy-coupling factor ABC transporter permease	-
ACMXYH_RS27875	-	6044259..6044501 (+)	243	WP_134422302.1	DUF2790 domain-containing protein	-
ACMXYH_RS27880	-	6044522..6045424 (-)	903	WP_415765565.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32296.58 Da
• Isoelectric Point: 7.9898

>NTDB_id=1096045 ACMXYH_RS27850 WP_415765561.1 6040700..6041572(+) (pilD) [Pseudomonas sp. ZB1P45]
MPFNDILTLYPLTFVISAMLVGLLIGSFLNVVVWRLPKMLDREWREEAREVLGLPGETPLSTFNLMLPHSRCPHCGHQIR
AWENIPVLSYLLLRGRCSNCTAAISKRYPLTELACGLLSAFIAWHFGFGWQACMALLLSWGLLTMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHDALWGAVAGYMALWTVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSMVG
AVVGVILLRLRNAKTSAPIPFGPFLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1096045 ACMXYH_RS27850 WP_415765561.1 6040700..6041572(+) (pilD) [Pseudomonas sp. ZB1P45]
ATGCCCTTTAACGACATTCTGACCCTCTACCCGTTGACCTTCGTAATCTCAGCCATGTTGGTCGGCCTGCTGATTGGCAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGACCGCGAATGGCGTGAGGAGGCTCGTGAAGTGTTGGGCT
TGCCAGGCGAAACACCGCTATCGACCTTCAACCTGATGCTGCCCCATTCCCGGTGCCCACATTGCGGCCATCAAATCCGC
GCCTGGGAAAATATTCCGGTGCTCAGTTATCTGCTCTTACGGGGTCGATGCTCGAACTGCACGGCAGCCATCAGCAAACG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGCGCTGCTCCTGAGCTGGGGGTTGCTGACGATGAGCCTGATCGACGCCGAACATCAACTGTTGCCGGATGTGCTGGTG
CTGCCACTGATATGGCTGGGGCTGATCGTCAACAGCTTCGGGCTCTTCGTGTCCTTGCATGATGCATTGTGGGGCGCGGT
GGCCGGCTATATGGCGTTGTGGACAGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGTGATT
TCAAGCTGTTAGCGATGTTCGGCGCCTGGGGTGGCTGGCAGATCTTGCCTCTGACCATCCTGTTATCGTCGATGGTGGGC
GCCGTTGTCGGCGTGATTTTGCTGCGTTTGCGCAACGCGAAAACCTCCGCGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	97.241	0.507
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Neisseria gonorrhoeae MS11	49.442	92.759	0.459
pilD	Acinetobacter baumannii D1279779	48.708	93.448	0.455
pilD	Acinetobacter nosocomialis M2	47.97	93.448	0.448