Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMYQ0_RS13975 Genome accession   NZ_CP180477
Coordinates   3004250..3005470 (+) Length   406 a.a.
NCBI ID   WP_415753512.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain CCM 8849     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2998652..3007570 3004250..3005470 within 0


Gene organization within MGE regions


Location: 2998652..3007570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ0_RS13940 - 2998652..2999551 (-) 900 WP_415753505.1 ABC transporter ATP-binding protein -
  ACMYQ0_RS13945 - 2999554..3000387 (-) 834 WP_415753506.1 hypothetical protein -
  ACMYQ0_RS13950 - 3000389..3001198 (-) 810 WP_415753507.1 hypothetical protein -
  ACMYQ0_RS13955 - 3001302..3001535 (-) 234 WP_415753508.1 type IV pilin protein -
  ACMYQ0_RS13960 - 3001633..3002109 (-) 477 WP_415753509.1 hypothetical protein -
  ACMYQ0_RS13965 pilA 3002125..3002310 (-) 186 WP_415753510.1 type IV pilin protein Machinery gene
  ACMYQ0_RS13970 pilB 3002544..3004247 (+) 1704 WP_415753511.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMYQ0_RS13975 pilC 3004250..3005470 (+) 1221 WP_415753512.1 type II secretion system F family protein Machinery gene
  ACMYQ0_RS13980 pilD 3005477..3006343 (+) 867 WP_415753513.1 prepilin peptidase Machinery gene
  ACMYQ0_RS13985 coaE 3006500..3007114 (+) 615 WP_415753514.1 dephospho-CoA kinase -
  ACMYQ0_RS13990 yacG 3007111..3007311 (+) 201 WP_415753515.1 DNA gyrase inhibitor YacG -
  ACMYQ0_RS13995 - 3007355..3007570 (-) 216 WP_415753516.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44298.97 Da        Isoelectric Point: 9.8955

>NTDB_id=1095984 ACMYQ0_RS13975 WP_415753512.1 3004250..3005470(+) (pilC) [Pseudomonas leptonychotis strain CCM 8849]
MAAKAPTTSTFAWEGTDKKGARTKGEINGQNPALVKAQLRKQGINPLKVKKKPKPLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQAFDIIGEGFENPNMRTLIDNVKQEVAAGNSFAASLRTKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPISVIIVALIVTAILLIKVVPQFESVFAGFGAELPAFTQVVVNMSRGLQEWWYLFILAFFVIGFTFK
EAHKRSEKFRDFLDRTLLKAPIVGDILYKAVVARFARTLSTTFSAGVPLVEALVSVEGASGNVVFRKAIAKIRNDVSSGT
QLNFAMRTTGVFPSMAIQMAAIGEESGSLDQMLDKTAEYYEAEVDNAVDNLTTLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGAVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1095984 ACMYQ0_RS13975 WP_415753512.1 3004250..3005470(+) (pilC) [Pseudomonas leptonychotis strain CCM 8849]
ATGGCGGCCAAAGCTCCAACCACTAGCACCTTTGCGTGGGAAGGCACCGATAAAAAGGGTGCCAGGACCAAAGGTGAAAT
CAATGGCCAGAACCCGGCCTTGGTCAAAGCACAACTGCGCAAGCAAGGAATCAATCCGCTCAAAGTCAAGAAAAAGCCCA
AGCCGTTATTCAGCGCCGGCAAAAAGATCAAACCCATGGACATCGCCCTGTTTACTCGGCAGATGGCGACCATGATGAAA
GCCGGAGTTCCACTGCTGCAAGCCTTCGACATTATTGGCGAGGGTTTTGAAAATCCAAACATGCGCACACTGATCGACAA
CGTCAAACAGGAAGTCGCTGCAGGTAATAGTTTCGCCGCCTCGCTACGCACCAAGCCGCAATACTTTGACGACCTATATT
GCAACCTGGTGGATGCCGGCGAGCAGTCTGGCGCTTTGGAAACTCTGCTAGACCGGGTTGCCACCTACAAAGAAAAAACA
GAAGCACTAAAAGCAAAAATCAAAAAAGCCATGACTTATCCAATCTCCGTGATCATCGTCGCACTCATCGTGACCGCTAT
TTTGCTGATCAAGGTAGTGCCGCAATTTGAGAGCGTATTTGCTGGGTTTGGCGCAGAATTGCCTGCCTTTACTCAGGTTG
TGGTAAATATGTCGCGTGGCCTGCAAGAGTGGTGGTATCTCTTTATATTGGCTTTTTTTGTAATCGGCTTTACGTTCAAG
GAGGCGCACAAGCGCTCTGAAAAGTTCCGTGATTTTTTGGATCGCACTCTATTGAAAGCACCTATCGTAGGGGACATTCT
CTACAAAGCCGTGGTTGCTCGCTTTGCCCGCACATTATCCACCACATTCTCTGCCGGCGTTCCCTTAGTCGAAGCGTTAG
TATCCGTTGAAGGAGCCTCCGGCAACGTTGTATTCCGCAAGGCGATCGCAAAGATCCGCAATGATGTGTCCTCAGGCACT
CAACTGAATTTTGCGATGCGCACCACCGGCGTATTCCCCAGCATGGCCATACAGATGGCAGCTATCGGCGAAGAATCCGG
CTCCTTGGATCAGATGCTGGACAAAACGGCGGAGTATTACGAGGCTGAAGTGGATAACGCCGTAGATAACCTCACTACCC
TTATGGAGCCGCTTATCATGTCAGTACTCGGCGTTCTGGTTGGCGGCCTGATCATTGCCATGTACTTGCCGATCTTCCAG
CTCGGCGCAGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.049

99.754

0.759
  pilC Acinetobacter baumannii D1279779

60.891

99.507

0.606
  pilC Acinetobacter baylyi ADP1

60.591

100

0.606
  pilC Legionella pneumophila strain ERS1305867

54.433

100

0.544
  pilG Neisseria gonorrhoeae MS11

45.477

98.03

0.446
  pilG Neisseria meningitidis 44/76-A

44.444

97.537

0.433
  pilC Vibrio campbellii strain DS40M4

42.998

100

0.431
  pilC Vibrio cholerae strain A1552

42.607

98.276

0.419

Multiple sequence alignment