Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACMVO4_RS02495 | Genome accession | NZ_CP180205 |
| Coordinates | 481268..481702 (-) | Length | 144 a.a. |
| NCBI ID | WP_069667590.1 | Uniprot ID | A0A178JAH3 |
| Organism | Vibrio europaeus strain EX1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 476268..486702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVO4_RS02475 (ACMVO4_02475) | coaE | 476800..477408 (-) | 609 | WP_171382771.1 | dephospho-CoA kinase | - |
| ACMVO4_RS02480 (ACMVO4_02480) | pilD | 477410..478279 (-) | 870 | WP_069667593.1 | prepilin peptidase | Machinery gene |
| ACMVO4_RS02485 (ACMVO4_02485) | pilC | 478337..479560 (-) | 1224 | WP_414931888.1 | type II secretion system F family protein | Machinery gene |
| ACMVO4_RS02490 (ACMVO4_02490) | pilB | 479571..481262 (-) | 1692 | WP_414931889.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACMVO4_RS02495 (ACMVO4_02495) | pilA | 481268..481702 (-) | 435 | WP_069667590.1 | type IV pilin protein | Machinery gene |
| ACMVO4_RS02500 (ACMVO4_02500) | nadC | 481944..482831 (-) | 888 | WP_069667589.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACMVO4_RS02505 (ACMVO4_02505) | ampD | 482963..483508 (+) | 546 | WP_272249761.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACMVO4_RS02510 (ACMVO4_02510) | fldB | 483650..484171 (-) | 522 | WP_004742606.1 | flavodoxin FldB | - |
| ACMVO4_RS02515 (ACMVO4_02515) | xerD | 484335..485231 (+) | 897 | WP_414932277.1 | site-specific tyrosine recombinase XerD | - |
| ACMVO4_RS02520 (ACMVO4_02520) | - | 485272..486024 (+) | 753 | WP_414931890.1 | thioredoxin fold domain-containing protein | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14567.37 Da Isoelectric Point: 4.4295
>NTDB_id=1094502 ACMVO4_RS02495 WP_069667590.1 481268..481702(-) (pilA) [Vibrio europaeus strain EX1]
MQSSQSSKAKGFTLIELMIVVAIIGVLASISIPAYQDYVRKSEAASALATLKSLITPAEVFYQENGTASAAALSNLGIDS
GANNLGTIASAITGTGSAAVPTLKFTFDSDSSMGSSDTITYSRDPSTGWSCAKAGAVPSLDGCS
MQSSQSSKAKGFTLIELMIVVAIIGVLASISIPAYQDYVRKSEAASALATLKSLITPAEVFYQENGTASAAALSNLGIDS
GANNLGTIASAITGTGSAAVPTLKFTFDSDSSMGSSDTITYSRDPSTGWSCAKAGAVPSLDGCS
Nucleotide
Download Length: 435 bp
>NTDB_id=1094502 ACMVO4_RS02495 WP_069667590.1 481268..481702(-) (pilA) [Vibrio europaeus strain EX1]
ATGCAAAGTTCACAAAGCAGCAAAGCCAAAGGCTTTACCTTAATTGAGTTGATGATTGTGGTAGCAATTATTGGCGTGCT
TGCGTCGATATCAATACCAGCTTATCAAGACTATGTTAGGAAATCTGAGGCGGCTTCAGCGCTAGCGACGTTAAAAAGCC
TGATTACGCCAGCTGAAGTTTTCTATCAAGAAAACGGCACCGCATCGGCCGCCGCTTTATCTAATTTAGGCATCGATAGC
GGCGCTAATAATTTAGGAACCATTGCCTCAGCAATAACTGGAACAGGTTCAGCAGCTGTTCCAACATTAAAGTTCACATT
CGATTCCGACAGCTCAATGGGAAGCAGTGACACCATTACCTATTCTCGAGACCCGAGTACCGGTTGGTCTTGCGCAAAAG
CGGGAGCAGTCCCTTCTCTAGATGGATGCTCATAA
ATGCAAAGTTCACAAAGCAGCAAAGCCAAAGGCTTTACCTTAATTGAGTTGATGATTGTGGTAGCAATTATTGGCGTGCT
TGCGTCGATATCAATACCAGCTTATCAAGACTATGTTAGGAAATCTGAGGCGGCTTCAGCGCTAGCGACGTTAAAAAGCC
TGATTACGCCAGCTGAAGTTTTCTATCAAGAAAACGGCACCGCATCGGCCGCCGCTTTATCTAATTTAGGCATCGATAGC
GGCGCTAATAATTTAGGAACCATTGCCTCAGCAATAACTGGAACAGGTTCAGCAGCTGTTCCAACATTAAAGTTCACATT
CGATTCCGACAGCTCAATGGGAAGCAGTGACACCATTACCTATTCTCGAGACCCGAGTACCGGTTGGTCTTGCGCAAAAG
CGGGAGCAGTCCCTTCTCTAGATGGATGCTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
59.028 |
100 |
0.59 |
| pilA | Pseudomonas aeruginosa PAK |
44.275 |
90.972 |
0.403 |
| pilA | Vibrio cholerae strain A1552 |
40.58 |
95.833 |
0.389 |
| pilA | Vibrio cholerae C6706 |
40.58 |
95.833 |
0.389 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.58 |
95.833 |
0.389 |
| comP | Acinetobacter baylyi ADP1 |
38.406 |
95.833 |
0.368 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.519 |
93.75 |
0.361 |