Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMVO4_RS02485 Genome accession   NZ_CP180205
Coordinates   478337..479560 (-) Length   407 a.a.
NCBI ID   WP_414931888.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473337..484560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS02445 (ACMVO4_02445) rpsP 473412..473660 (+) 249 WP_004742593.1 30S ribosomal protein S16 -
  ACMVO4_RS02450 (ACMVO4_02450) rimM 473690..474238 (+) 549 WP_069667597.1 ribosome maturation factor RimM -
  ACMVO4_RS02455 (ACMVO4_02455) trmD 474266..475009 (+) 744 WP_069667596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACMVO4_RS02460 (ACMVO4_02460) rplS 475051..475404 (+) 354 WP_004742596.1 50S ribosomal protein L19 -
  ACMVO4_RS02465 (ACMVO4_02465) yacG 475768..475962 (-) 195 WP_069667595.1 DNA gyrase inhibitor YacG -
  ACMVO4_RS02470 (ACMVO4_02470) zapD 476025..476765 (-) 741 WP_004742598.1 cell division protein ZapD -
  ACMVO4_RS02475 (ACMVO4_02475) coaE 476800..477408 (-) 609 WP_171382771.1 dephospho-CoA kinase -
  ACMVO4_RS02480 (ACMVO4_02480) pilD 477410..478279 (-) 870 WP_069667593.1 prepilin peptidase Machinery gene
  ACMVO4_RS02485 (ACMVO4_02485) pilC 478337..479560 (-) 1224 WP_414931888.1 type II secretion system F family protein Machinery gene
  ACMVO4_RS02490 (ACMVO4_02490) pilB 479571..481262 (-) 1692 WP_414931889.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMVO4_RS02495 (ACMVO4_02495) pilA 481268..481702 (-) 435 WP_069667590.1 type IV pilin protein Machinery gene
  ACMVO4_RS02500 (ACMVO4_02500) nadC 481944..482831 (-) 888 WP_069667589.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMVO4_RS02505 (ACMVO4_02505) ampD 482963..483508 (+) 546 WP_272249761.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMVO4_RS02510 (ACMVO4_02510) fldB 483650..484171 (-) 522 WP_004742606.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44970.22 Da        Isoelectric Point: 10.3165

>NTDB_id=1094500 ACMVO4_RS02485 WP_414931888.1 478337..479560(-) (pilC) [Vibrio europaeus strain EX1]
MKATSHQLKQYRWKGVNQRGKLVSGSTLALSDNEVKDKLSEQSIRVKSLRRKSLSLVTRLTQRVKKKDITLLTRQLSTML
ATGVPLIQALKLITLNHPKAEMRSILSYISKEVESGNPLSQSLGTASPLFDSLYTDLVATGEQSGNLAEVLQRIADYREK
SQRLNAKVTKALIYPTMVMTTAFAVTYLMLTMVIPQFEAMFAGFGAELPWLTQQVLALSAWLQTYSGASLIGLMLMLGVI
KLGLTKSYRLQLLFSRALLKIPLLGNILTKAAIAKFSRTLATSFNAGIPILEGIRASAKTVRNQHYHQAIKTAMLDVTAG
MPLYLSLRNSDCFPEMVLQMIMIGEESGRLGEMLHKIADVYEFEIDNTVDNLGKIIEPAIIIFLGIVVGGLIVAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1094500 ACMVO4_RS02485 WP_414931888.1 478337..479560(-) (pilC) [Vibrio europaeus strain EX1]
ATGAAAGCAACATCTCATCAGCTCAAACAGTATCGCTGGAAGGGGGTTAACCAGCGAGGAAAGCTCGTTTCTGGCTCTAC
GCTCGCCTTAAGTGACAACGAAGTAAAAGATAAGCTGAGTGAACAATCGATCCGTGTTAAATCTCTAAGAAGAAAGTCAC
TGTCTCTCGTTACTCGCCTAACACAAAGAGTCAAAAAGAAAGACATCACTCTACTCACGAGGCAGCTGAGCACTATGCTC
GCGACTGGAGTGCCACTGATTCAAGCATTGAAGCTTATTACTCTTAACCACCCCAAAGCTGAGATGAGATCGATCTTAAG
CTACATAAGCAAGGAGGTAGAATCAGGAAACCCGCTATCTCAGAGCTTAGGCACCGCTAGCCCACTATTCGATAGCCTTT
ATACCGACCTCGTTGCCACTGGAGAGCAGTCTGGCAACTTAGCGGAAGTACTCCAACGTATTGCTGACTATCGGGAAAAA
TCGCAACGACTTAACGCCAAGGTAACCAAAGCGCTCATCTATCCCACTATGGTGATGACCACGGCTTTCGCAGTTACCTA
TCTCATGCTAACAATGGTGATACCTCAATTTGAAGCGATGTTTGCAGGCTTTGGTGCTGAGCTTCCTTGGCTTACCCAAC
AAGTGCTGGCCTTATCCGCTTGGCTACAAACCTATTCGGGAGCTAGCTTAATTGGTTTGATGCTGATGTTAGGGGTCATT
AAGCTCGGTTTAACAAAATCATACCGACTTCAATTACTGTTTAGTCGTGCCCTACTCAAGATCCCGCTTCTCGGCAACAT
CTTGACTAAAGCGGCAATTGCTAAATTTAGCCGAACACTTGCCACTAGCTTTAACGCCGGAATCCCAATTCTAGAAGGTA
TAAGAGCCTCCGCTAAAACGGTTCGTAACCAGCATTATCATCAAGCAATCAAAACGGCTATGCTTGATGTCACTGCAGGT
ATGCCGCTGTATCTTTCACTGCGCAACTCTGACTGTTTTCCCGAAATGGTTTTGCAGATGATAATGATAGGTGAAGAGTC
AGGACGACTCGGAGAAATGCTACACAAAATTGCCGATGTATATGAATTTGAAATCGATAACACGGTTGATAACCTTGGTA
AGATCATAGAGCCCGCGATTATCATCTTTCTAGGTATTGTTGTCGGTGGTCTGATTGTCGCAATGTATTTACCTATCTTT
AATTTGATGAGTGTCTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

62.745

100

0.629
  pilC Vibrio campbellii strain DS40M4

59.024

100

0.595
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baylyi ADP1

39.454

99.017

0.391
  pilC Legionella pneumophila strain ERS1305867

38.142

100

0.383
  pilC Acinetobacter baumannii D1279779

37.717

99.017

0.373
  pilG Neisseria gonorrhoeae MS11

39.276

95.086

0.373
  pilG Neisseria meningitidis 44/76-A

39.018

95.086

0.371

Multiple sequence alignment