Detailed information NTG1094499

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMVO4_RS02480
• Genome accession: NZ_CP180205
• Coordinates: 477410..478279 (-)
• Length: 289 a.a.
• NCBI ID: WP_069667593.1
• Uniprot ID: -
• Organism: Vibrio europaeus strain EX1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 472410..483279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMVO4_RS02445 (ACMVO4_02445)	rpsP	473412..473660 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
ACMVO4_RS02450 (ACMVO4_02450)	rimM	473690..474238 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-
ACMVO4_RS02455 (ACMVO4_02455)	trmD	474266..475009 (+)	744	WP_069667596.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACMVO4_RS02460 (ACMVO4_02460)	rplS	475051..475404 (+)	354	WP_004742596.1	50S ribosomal protein L19	-
ACMVO4_RS02465 (ACMVO4_02465)	yacG	475768..475962 (-)	195	WP_069667595.1	DNA gyrase inhibitor YacG	-
ACMVO4_RS02470 (ACMVO4_02470)	zapD	476025..476765 (-)	741	WP_004742598.1	cell division protein ZapD	-
ACMVO4_RS02475 (ACMVO4_02475)	coaE	476800..477408 (-)	609	WP_171382771.1	dephospho-CoA kinase	-
ACMVO4_RS02480 (ACMVO4_02480)	pilD	477410..478279 (-)	870	WP_069667593.1	prepilin peptidase	Machinery gene
ACMVO4_RS02485 (ACMVO4_02485)	pilC	478337..479560 (-)	1224	WP_414931888.1	type II secretion system F family protein	Machinery gene
ACMVO4_RS02490 (ACMVO4_02490)	pilB	479571..481262 (-)	1692	WP_414931889.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMVO4_RS02495 (ACMVO4_02495)	pilA	481268..481702 (-)	435	WP_069667590.1	type IV pilin protein	Machinery gene
ACMVO4_RS02500 (ACMVO4_02500)	nadC	481944..482831 (-)	888	WP_069667589.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32313.34 Da
• Isoelectric Point: 4.7490

>NTDB_id=1094499 ACMVO4_RS02480 WP_069667593.1 477410..478279(-) (pilD) [Vibrio europaeus strain EX1]
MDVFDYYPWLFPTLATLFGLIVGSFLNVVIHRLPIIMEREWRAECAESFPEYQISPPEGTYNLSVPNSTCPKCDTPIRII
DNIPVVSWLILKGKCRQCDNKISMRYPLIEVLSAGLCFVIANQFALSYFSIALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWAGIALALFGISPVSLQDAVIGAMAGYLALWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
IFGLIQLKLKSQGIDKAFPFGPYLAIAGWLSMMWGNDILNWYLSNFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1094499 ACMVO4_RS02480 WP_069667593.1 477410..478279(-) (pilD) [Vibrio europaeus strain EX1]
ATGGACGTTTTTGACTATTACCCTTGGCTTTTTCCTACACTAGCAACATTGTTTGGTCTTATCGTAGGCAGCTTTTTAAA
CGTGGTTATCCATCGCCTGCCGATCATCATGGAACGTGAATGGCGAGCCGAATGTGCGGAAAGCTTTCCCGAATACCAGA
TATCGCCTCCAGAAGGGACCTATAACCTCAGCGTTCCAAATTCAACTTGCCCTAAATGTGATACTCCCATTCGCATAATT
GATAACATTCCCGTTGTTAGTTGGCTGATATTGAAAGGAAAATGTCGTCAATGCGATAATAAAATAAGCATGCGCTACCC
TCTGATTGAGGTCCTATCAGCAGGCTTATGTTTTGTTATCGCTAATCAGTTTGCATTGAGCTACTTCTCGATTGCCTTGC
TGTTTTTCACCTTTACTCTTATCGCGGCGACCTTTATTGATCTCGACACCATGCTGCTGCCAGATCAACTCACTCTTCCT
TTAACATGGGCAGGAATTGCGCTCGCACTGTTTGGAATTAGCCCAGTGTCTCTGCAAGATGCGGTGATCGGTGCAATGGC
TGGCTATCTTGCTTTATGGTCAGTTTACTGGCTGTTTAAGCTAGCCACAGGCAAAGAAGGGATGGGTTACGGAGACTTTA
AACTGCTTGCCGCCTTAGGCGCTTGGCTTGGTTGGCAGTATTTGCCGATGATCATTTTGCTCTCTTCTTTAGTTGGCTTA
ATTTTTGGCCTCATACAGCTCAAATTGAAAAGCCAAGGAATCGACAAAGCCTTCCCATTTGGCCCTTATTTAGCTATTGC
AGGCTGGTTGAGTATGATGTGGGGAAATGACATTCTCAATTGGTATTTAAGCAACTTTTTAGGAATCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.087	100	0.751
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter baumannii D1279779	49.63	93.426	0.464
pilD	Acinetobacter nosocomialis M2	49.446	93.772	0.464
pilD	Neisseria gonorrhoeae MS11	47.273	95.156	0.45