Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACMGGG_RS22505 Genome accession   NZ_CP179908
Coordinates   4966144..4967382 (-) Length   412 a.a.
NCBI ID   WP_414155836.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-44-b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4961144..4972382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGG_RS22490 (ACMGGG_22490) - 4962812..4964410 (-) 1599 WP_414154457.1 AAA family ATPase -
  ACMGGG_RS22495 (ACMGGG_22495) aroB 4964426..4965523 (-) 1098 WP_054891191.1 3-dehydroquinate synthase -
  ACMGGG_RS22500 (ACMGGG_22500) aroK 4965621..4966139 (-) 519 WP_414154458.1 shikimate kinase AroK -
  ACMGGG_RS22505 (ACMGGG_22505) pilQ 4966144..4967382 (-) 1239 WP_414155836.1 type IV pilus secretin PilQ Machinery gene
  ACMGGG_RS22510 (ACMGGG_22510) - 4967336..4968295 (-) 960 WP_414154459.1 pilus assembly protein PilP -
  ACMGGG_RS22515 (ACMGGG_22515) - 4968349..4968882 (-) 534 WP_054891187.1 PilN domain-containing protein -
  ACMGGG_RS22520 (ACMGGG_22520) pilM 4968879..4969763 (-) 885 WP_063541605.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44621.02 Da        Isoelectric Point: 4.8665

>NTDB_id=1093781 ACMGGG_RS22505 WP_414155836.1 4966144..4967382(-) (pilQ) [Pseudomonas sp. BNK-44-b]
MLLTLRAMAEPLYKGEPLSLNFQDVEVRAVLQVLADYTGINLVASDTVQGNITLRLHEVPWDQALELVLRSRGLAKREEG
NVLLVAPAAELAEQSREARIDQALEAQLQPLHRELLPIHHADASDLAKLLLESLADDEPAAGRGSLSVDSRTNTLIATQS
AARLAELRQLVADLDVPVRQVMIEARIVEANVDYENVLGIRWGAKLGGMPARSGSELFVDLGAQGATSGVGVGVVRGDVL
LDLELSAMEKSGNGEVISQPKVVTADKETARILKGTEVPYQQSSKSGATSVAFREASLSLEVTPQITPDGKVIMAVRVTK
DEPDYVNALNDVPPIRKNEVNAKVRVADGETIVIGGVYSTSHNNVVDKVPFLGDLPYVGRLFRRDVLQEKKSELLVFLTP
RIMSDRAIAVSR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1093781 ACMGGG_RS22505 WP_414155836.1 4966144..4967382(-) (pilQ) [Pseudomonas sp. BNK-44-b]
ATGCTGCTGACGCTACGGGCAATGGCGGAGCCCCTGTACAAAGGTGAGCCGCTTTCGCTGAATTTCCAGGACGTCGAGGT
TCGTGCAGTGCTGCAGGTGCTCGCCGATTATACCGGCATCAACCTGGTGGCCAGTGACACGGTTCAGGGCAATATCACCC
TGCGGCTGCACGAAGTGCCCTGGGATCAGGCATTGGAGCTGGTGTTGCGCAGCCGCGGGCTGGCCAAGCGTGAGGAGGGC
AATGTGCTGTTGGTCGCCCCCGCCGCAGAGCTCGCCGAGCAGTCGCGCGAGGCGCGCATCGACCAGGCGCTCGAGGCGCA
GTTGCAGCCGCTGCATCGGGAGTTGCTGCCGATTCATCATGCCGATGCGTCCGACCTGGCGAAACTATTGTTGGAGAGTC
TCGCGGATGATGAACCTGCGGCAGGGCGCGGCAGTTTGAGCGTGGATTCGCGGACCAACACCCTGATCGCCACCCAGTCG
GCCGCGCGCCTGGCAGAGTTGCGGCAACTGGTTGCGGATCTGGATGTGCCGGTGCGCCAGGTGATGATCGAGGCCCGGAT
CGTCGAGGCCAACGTCGATTACGAGAATGTGCTCGGCATTCGCTGGGGTGCAAAGCTGGGCGGTATGCCAGCGCGGTCAG
GCAGTGAGCTGTTTGTCGATCTTGGCGCGCAGGGGGCGACCTCTGGCGTGGGCGTAGGGGTGGTGCGCGGCGATGTGCTG
CTTGATCTGGAGCTCAGTGCCATGGAGAAAAGCGGCAATGGCGAGGTCATCTCCCAGCCCAAGGTGGTCACTGCCGACAA
GGAAACCGCGCGTATTCTCAAGGGCACCGAAGTGCCTTACCAGCAGTCGAGCAAGAGCGGCGCCACCTCGGTGGCTTTCC
GCGAGGCATCGCTGTCACTGGAGGTCACGCCGCAGATCACCCCGGATGGCAAGGTCATCATGGCGGTGCGGGTGACCAAG
GACGAGCCGGACTACGTCAATGCCCTCAACGACGTGCCACCGATCCGCAAGAACGAGGTCAATGCCAAGGTGCGCGTGGC
CGATGGCGAGACGATTGTGATTGGTGGCGTGTACTCGACGTCGCATAACAATGTAGTGGACAAGGTGCCATTTCTTGGCG
ATCTACCGTATGTTGGACGGCTGTTTCGACGCGATGTATTACAAGAGAAAAAATCTGAGCTGCTGGTCTTCCTGACTCCG
CGTATCATGAGTGACCGGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(41-87)

Bacterial type II/III secretion system short domain (Secretin_N)

(115-180)

Bacterial type II and III secretion system protein (Secretin)

(247-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

58.945

100

0.624
  comQ Acinetobacter baylyi ADP1

43.111

100

0.471
  pilQ Acinetobacter baumannii strain A118

41.522

100

0.464
  pilQ Acinetobacter baumannii D1279779

41.522

100

0.464
  pilQ Vibrio campbellii strain DS40M4

41.259

100

0.43
  pilQ Legionella pneumophila strain ERS1305867

41.844

100

0.43
  pilQ Legionella pneumophila strain Lp02

41.844

100

0.43
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.346

100

0.417
  pilQ Vibrio cholerae strain A1552

41.346

100

0.417
  pilQ Neisseria gonorrhoeae strain FA1090

35.831

100

0.371
  pilQ Neisseria meningitidis M1080

35.545

100

0.364
  pilQ Neisseria meningitidis MC58

35.545

100

0.364

Multiple sequence alignment