Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACLZHS_RS06180 | Genome accession | NZ_CP178841 |
| Coordinates | 1291346..1291663 (+) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain HE23 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1286346..1296663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLZHS_RS06150 | - | 1287123..1287323 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| ACLZHS_RS06155 | - | 1287323..1288309 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| ACLZHS_RS06160 | - | 1288309..1288635 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACLZHS_RS06165 | - | 1288635..1289258 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| ACLZHS_RS06170 | comGA | 1289315..1290289 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACLZHS_RS06175 | comGB | 1290261..1291328 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACLZHS_RS06180 | comGC | 1291346..1291663 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACLZHS_RS06185 | comGD | 1291653..1292090 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| ACLZHS_RS06190 | - | 1292077..1292370 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| ACLZHS_RS06195 | - | 1292294..1292785 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| ACLZHS_RS06200 | - | 1292929..1294101 (-) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| ACLZHS_RS06205 | - | 1294282..1294794 (+) | 513 | WP_002440040.1 | shikimate kinase | - |
| ACLZHS_RS06210 | gcvT | 1295012..1296103 (+) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=1091890 ACLZHS_RS06180 WP_001831271.1 1291346..1291663(+) (comGC) [Staphylococcus epidermidis strain HE23]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1091890 ACLZHS_RS06180 WP_001831271.1 1291346..1291663(+) (comGC) [Staphylococcus epidermidis strain HE23]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |