Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACLZHS_RS06175 | Genome accession | NZ_CP178841 |
| Coordinates | 1290261..1291328 (+) | Length | 355 a.a. |
| NCBI ID | WP_001831131.1 | Uniprot ID | A0A9Q5JLH5 |
| Organism | Staphylococcus epidermidis strain HE23 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1285261..1296328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLZHS_RS06145 | - | 1285679..1287139 (+) | 1461 | WP_001832757.1 | rhomboid family protein | - |
| ACLZHS_RS06150 | - | 1287123..1287323 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| ACLZHS_RS06155 | - | 1287323..1288309 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| ACLZHS_RS06160 | - | 1288309..1288635 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACLZHS_RS06165 | - | 1288635..1289258 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| ACLZHS_RS06170 | comGA | 1289315..1290289 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACLZHS_RS06175 | comGB | 1290261..1291328 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACLZHS_RS06180 | comGC | 1291346..1291663 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACLZHS_RS06185 | comGD | 1291653..1292090 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| ACLZHS_RS06190 | - | 1292077..1292370 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| ACLZHS_RS06195 | - | 1292294..1292785 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| ACLZHS_RS06200 | - | 1292929..1294101 (-) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| ACLZHS_RS06205 | - | 1294282..1294794 (+) | 513 | WP_002440040.1 | shikimate kinase | - |
| ACLZHS_RS06210 | gcvT | 1295012..1296103 (+) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42379.68 Da Isoelectric Point: 10.1702
>NTDB_id=1091889 ACLZHS_RS06175 WP_001831131.1 1290261..1291328(+) (comGB) [Staphylococcus epidermidis strain HE23]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=1091889 ACLZHS_RS06175 WP_001831131.1 1290261..1291328(+) (comGB) [Staphylococcus epidermidis strain HE23]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.719 |
100 |
0.499 |
| comGB | Staphylococcus aureus N315 |
49.719 |
100 |
0.499 |