Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABFT42_RS18385 | Genome accession | NZ_CP178596 |
| Coordinates | 3555376..3555717 (-) | Length | 113 a.a. |
| NCBI ID | WP_326203344.1 | Uniprot ID | - |
| Organism | Bacillus mojavensis strain C3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3550376..3560717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFT42_RS18370 (ABFT42_18370) | - | 3550613..3553387 (+) | 2775 | WP_010332163.1 | DEAD/DEAH box helicase | - |
| ABFT42_RS18375 (ABFT42_18375) | - | 3553510..3554367 (-) | 858 | WP_326191553.1 | Cof-type HAD-IIB family hydrolase | - |
| ABFT42_RS18380 (ABFT42_18380) | - | 3554373..3555149 (-) | 777 | WP_168748938.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| ABFT42_RS18385 (ABFT42_18385) | ssbB | 3555376..3555717 (-) | 342 | WP_326203344.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| ABFT42_RS18390 (ABFT42_18390) | - | 3555795..3556178 (-) | 384 | WP_010332167.1 | hypothetical protein | - |
| ABFT42_RS18395 (ABFT42_18395) | - | 3556352..3556762 (+) | 411 | WP_010332168.1 | YwpF-like family protein | - |
| ABFT42_RS18400 (ABFT42_18400) | blaOXA | 3556816..3557619 (+) | 804 | WP_168748939.1 | class D beta-lactamase | - |
| ABFT42_RS18405 (ABFT42_18405) | - | 3557701..3558360 (-) | 660 | WP_286059484.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12534.26 Da Isoelectric Point: 8.4667
>NTDB_id=1090345 ABFT42_RS18385 WP_326203344.1 3555376..3555717(-) (ssbB) [Bacillus mojavensis strain C3]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGDIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGDIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=1090345 ABFT42_RS18385 WP_326203344.1 3555376..3555717(-) (ssbB) [Bacillus mojavensis strain C3]
ATGTTCAATCAGGTCATGCTTGTCGGACGGTTAACAAAAGACCCTGAGCTTCGATACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACGATCGCGGTTAACCGCAGCTTCAAAAATGCTTCGGGGGATATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGAAGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTATGTAACTGAAGTGTTGGCTGACACTGTTCGTTTTATGGATCCTAAACC
TCGGGAAAAAGCTGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGGTTAACAAAAGACCCTGAGCTTCGATACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACGATCGCGGTTAACCGCAGCTTCAAAAATGCTTCGGGGGATATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGAAGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTATGTAACTGAAGTGTTGGCTGACACTGTTCGTTTTATGGATCCTAAACC
TCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
92.92 |
100 |
0.929 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
93.805 |
0.575 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.222 |
95.575 |
0.451 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.519 |
95.575 |
0.416 |
| ssbA | Streptococcus mutans UA159 |
44.34 |
93.805 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.593 |
95.575 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.593 |
95.575 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.593 |
95.575 |
0.407 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.593 |
95.575 |
0.407 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
40 |
92.92 |
0.372 |