Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACLZ2J_RS19425 Genome accession   NZ_CP178514
Coordinates   3707677..3708018 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain BS18-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3702677..3713018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS19410 hepAB 3702920..3705688 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  ACLZ2J_RS19415 ywpJ 3705814..3706671 (-) 858 WP_003242946.1 phosphatase YwpJ -
  ACLZ2J_RS19420 glcR 3706677..3707453 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ACLZ2J_RS19425 ssbB 3707677..3708018 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACLZ2J_RS19430 ywpG 3708095..3708478 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  ACLZ2J_RS19435 ywpF 3708653..3709063 (+) 411 WP_003227794.1 YwpF-like family protein -
  ACLZ2J_RS19440 - 3709203..3709595 (-) 393 Protein_3770 class A sortase -
  ACLZ2J_RS19445 - 3709669..3709821 (-) 153 Protein_3771 prealbumin-like fold domain-containing protein -
  ACLZ2J_RS19450 ywpD 3709855..3710691 (+) 837 WP_003227787.1 sensor histidine kinase -
  ACLZ2J_RS19455 mscL 3710738..3711130 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  ACLZ2J_RS19460 fabZ 3711203..3711628 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACLZ2J_RS19465 rapD 3711820..3712884 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=1089839 ACLZ2J_RS19425 WP_003227798.1 3707677..3708018(-) (ssbB) [Bacillus subtilis strain BS18-1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1089839 ACLZ2J_RS19425 WP_003227798.1 3707677..3708018(-) (ssbB) [Bacillus subtilis strain BS18-1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment