Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLFAM_RS04075 | Genome accession | NZ_CP178226 |
| Coordinates | 833030..833455 (-) | Length | 141 a.a. |
| NCBI ID | WP_039116136.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain L-WY410 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 790277..845658 | 833030..833455 | within | 0 |
Gene organization within MGE regions
Location: 790277..845658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLFAM_RS03795 (ACLFAM_03795) | - | 790277..791155 (-) | 879 | WP_021722576.1 | LysR family transcriptional regulator | - |
| ACLFAM_RS03800 (ACLFAM_03800) | - | 791171..791575 (-) | 405 | WP_023189759.1 | MerR family transcriptional regulator | - |
| ACLFAM_RS03805 (ACLFAM_03805) | pepC | 791657..792967 (-) | 1311 | WP_039116080.1 | aminopeptidase C | - |
| ACLFAM_RS03810 (ACLFAM_03810) | yqeK | 793096..793689 (-) | 594 | WP_025017102.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| ACLFAM_RS03815 (ACLFAM_03815) | - | 793747..794427 (-) | 681 | WP_012898438.1 | 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | - |
| ACLFAM_RS03820 (ACLFAM_03820) | macP | 794460..794738 (-) | 279 | WP_003130796.1 | cell wall synthase accessory phosphoprotein MacP | - |
| ACLFAM_RS03825 (ACLFAM_03825) | - | 794731..795315 (-) | 585 | WP_012898439.1 | NUDIX hydrolase | - |
| ACLFAM_RS03830 (ACLFAM_03830) | glmU | 795420..796796 (-) | 1377 | WP_003130798.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
| ACLFAM_RS03835 (ACLFAM_03835) | proC | 797024..797812 (+) | 789 | WP_012898440.1 | pyrroline-5-carboxylate reductase | - |
| ACLFAM_RS03840 (ACLFAM_03840) | rpsO | 797891..798160 (-) | 270 | WP_010906184.1 | 30S ribosomal protein S15 | - |
| ACLFAM_RS03845 (ACLFAM_03845) | pknB | 798342..800225 (-) | 1884 | WP_039116083.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| ACLFAM_RS03850 (ACLFAM_03850) | - | 800225..801001 (-) | 777 | WP_039116084.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| ACLFAM_RS03855 (ACLFAM_03855) | rsmB | 801082..802356 (-) | 1275 | WP_014570715.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| ACLFAM_RS03865 (ACLFAM_03865) | - | 803559..804413 (-) | 855 | WP_039116086.1 | GH25 family lysozyme | - |
| ACLFAM_RS03870 (ACLFAM_03870) | - | 804415..804867 (-) | 453 | WP_039116087.1 | phage holin | - |
| ACLFAM_RS03875 (ACLFAM_03875) | - | 804883..805230 (-) | 348 | WP_011835796.1 | hypothetical protein | - |
| ACLFAM_RS03880 (ACLFAM_03880) | - | 805243..805479 (-) | 237 | WP_039116726.1 | hypothetical protein | - |
| ACLFAM_RS03885 (ACLFAM_03885) | - | 805490..808939 (-) | 3450 | WP_052230931.1 | hypothetical protein | - |
| ACLFAM_RS03890 (ACLFAM_03890) | - | 808939..810465 (-) | 1527 | WP_155276109.1 | distal tail protein Dit | - |
| ACLFAM_RS03895 (ACLFAM_03895) | - | 810462..814514 (-) | 4053 | WP_052230932.1 | phage tail tape measure protein | - |
| ACLFAM_RS03900 (ACLFAM_03900) | - | 814625..815287 (-) | 663 | WP_230593116.1 | DUF4352 domain-containing protein | - |
| ACLFAM_RS03905 (ACLFAM_03905) | - | 815389..815601 (-) | 213 | WP_039116089.1 | hypothetical protein | - |
| ACLFAM_RS03910 (ACLFAM_03910) | gpG | 815598..815915 (-) | 318 | WP_031560789.1 | phage tail assembly chaperone G | - |
| ACLFAM_RS03915 (ACLFAM_03915) | - | 815919..816518 (-) | 600 | WP_039116091.1 | major tail protein | - |
| ACLFAM_RS03920 (ACLFAM_03920) | - | 816537..816926 (-) | 390 | WP_023189090.1 | hypothetical protein | - |
| ACLFAM_RS03925 (ACLFAM_03925) | - | 816923..817327 (-) | 405 | WP_039116093.1 | HK97 gp10 family phage protein | - |
| ACLFAM_RS03930 (ACLFAM_03930) | - | 817320..817706 (-) | 387 | WP_039116095.1 | hypothetical protein | - |
| ACLFAM_RS03935 (ACLFAM_03935) | - | 817703..818005 (-) | 303 | WP_039116097.1 | hypothetical protein | - |
| ACLFAM_RS03940 (ACLFAM_03940) | - | 818018..818173 (-) | 156 | WP_167593704.1 | hypothetical protein | - |
| ACLFAM_RS03945 (ACLFAM_03945) | - | 818184..819329 (-) | 1146 | WP_039116099.1 | phage major capsid protein | - |
| ACLFAM_RS03950 (ACLFAM_03950) | - | 819329..820147 (-) | 819 | WP_052230934.1 | head maturation protease, ClpP-related | - |
| ACLFAM_RS03955 (ACLFAM_03955) | - | 820134..821327 (-) | 1194 | WP_039116101.1 | phage portal protein | - |
| ACLFAM_RS03960 (ACLFAM_03960) | - | 821610..822260 (-) | 651 | WP_039116103.1 | hypothetical protein | - |
| ACLFAM_RS03965 (ACLFAM_03965) | - | 822337..824076 (-) | 1740 | WP_039116105.1 | terminase large subunit domain-containing protein | - |
| ACLFAM_RS03970 (ACLFAM_03970) | - | 824073..824666 (-) | 594 | WP_230593117.1 | helix-turn-helix domain-containing protein | - |
| ACLFAM_RS03975 (ACLFAM_03975) | - | 824808..825107 (-) | 300 | WP_039116107.1 | HNH endonuclease | - |
| ACLFAM_RS03980 (ACLFAM_03980) | - | 825156..825455 (-) | 300 | WP_039116109.1 | hypothetical protein | - |
| ACLFAM_RS03985 (ACLFAM_03985) | - | 825533..825805 (-) | 273 | WP_039116111.1 | hypothetical protein | - |
| ACLFAM_RS03990 (ACLFAM_03990) | - | 826330..826485 (+) | 156 | WP_014572174.1 | hypothetical protein | - |
| ACLFAM_RS03995 (ACLFAM_03995) | - | 826524..826703 (-) | 180 | WP_039116113.1 | DUF1660 domain-containing protein | - |
| ACLFAM_RS04000 (ACLFAM_04000) | - | 826700..827134 (-) | 435 | WP_039116115.1 | DNA N-6-adenine-methyltransferase | - |
| ACLFAM_RS04005 (ACLFAM_04005) | - | 827127..827522 (-) | 396 | WP_039116116.1 | hypothetical protein | - |
| ACLFAM_RS04010 (ACLFAM_04010) | - | 827630..827893 (-) | 264 | WP_080756669.1 | hypothetical protein | - |
| ACLFAM_RS04015 (ACLFAM_04015) | - | 828148..828477 (-) | 330 | WP_039116117.1 | hypothetical protein | - |
| ACLFAM_RS04020 (ACLFAM_04020) | - | 828474..829100 (-) | 627 | WP_039116118.1 | DUF1642 domain-containing protein | - |
| ACLFAM_RS04025 (ACLFAM_04025) | - | 829093..829374 (-) | 282 | WP_039116119.1 | hypothetical protein | - |
| ACLFAM_RS04030 (ACLFAM_04030) | - | 829367..829660 (-) | 294 | WP_155276110.1 | hypothetical protein | - |
| ACLFAM_RS04035 (ACLFAM_04035) | - | 829678..829866 (-) | 189 | WP_039116120.1 | hypothetical protein | - |
| ACLFAM_RS04040 (ACLFAM_04040) | - | 829877..830239 (-) | 363 | WP_039116122.1 | DUF658 family protein | - |
| ACLFAM_RS04045 (ACLFAM_04045) | - | 830214..830378 (-) | 165 | WP_010905354.1 | hypothetical protein | - |
| ACLFAM_RS04050 (ACLFAM_04050) | - | 830486..830725 (-) | 240 | WP_039116124.1 | DUF1031 domain-containing protein | - |
| ACLFAM_RS04055 (ACLFAM_04055) | - | 830722..831096 (-) | 375 | WP_039116126.1 | DUF1064 domain-containing protein | - |
| ACLFAM_RS04060 (ACLFAM_04060) | - | 831077..831250 (-) | 174 | WP_039116128.1 | hypothetical protein | - |
| ACLFAM_RS04065 (ACLFAM_04065) | - | 831259..832149 (-) | 891 | WP_039116130.1 | ATP-binding protein | - |
| ACLFAM_RS04070 (ACLFAM_04070) | - | 832159..832905 (-) | 747 | WP_039116133.1 | conserved phage C-terminal domain-containing protein | - |
| ACLFAM_RS04075 (ACLFAM_04075) | ssb | 833030..833455 (-) | 426 | WP_039116136.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLFAM_RS04080 (ACLFAM_04080) | - | 833448..834206 (-) | 759 | WP_039116138.1 | Rad52/Rad22 family DNA repair protein | - |
| ACLFAM_RS04085 (ACLFAM_04085) | - | 834215..834610 (-) | 396 | WP_039116139.1 | hypothetical protein | - |
| ACLFAM_RS04090 (ACLFAM_04090) | - | 834709..834855 (-) | 147 | WP_021469336.1 | hypothetical protein | - |
| ACLFAM_RS04095 (ACLFAM_04095) | - | 834960..835349 (+) | 390 | WP_039116140.1 | hypothetical protein | - |
| ACLFAM_RS04100 (ACLFAM_04100) | - | 835342..835506 (-) | 165 | WP_155276111.1 | hypothetical protein | - |
| ACLFAM_RS04105 (ACLFAM_04105) | - | 835599..835868 (-) | 270 | WP_021212293.1 | hypothetical protein | - |
| ACLFAM_RS04110 (ACLFAM_04110) | - | 835881..836633 (-) | 753 | WP_039116143.1 | phage antirepressor KilAC domain-containing protein | - |
| ACLFAM_RS04115 (ACLFAM_04115) | - | 836645..836893 (-) | 249 | WP_031559261.1 | helix-turn-helix transcriptional regulator | - |
| ACLFAM_RS04120 (ACLFAM_04120) | - | 837026..837163 (+) | 138 | WP_080756632.1 | zinc ribbon-containing protein | - |
| ACLFAM_RS04125 (ACLFAM_04125) | - | 837193..837315 (-) | 123 | WP_258553365.1 | hypothetical protein | - |
| ACLFAM_RS04130 (ACLFAM_04130) | - | 837472..838317 (+) | 846 | WP_039116146.1 | Abi-alpha family protein | - |
| ACLFAM_RS04135 (ACLFAM_04135) | - | 838765..839295 (+) | 531 | WP_230593119.1 | helix-turn-helix domain-containing protein | - |
| ACLFAM_RS04140 (ACLFAM_04140) | - | 839301..839735 (+) | 435 | WP_039116150.1 | zinc peptidase | - |
| ACLFAM_RS04145 (ACLFAM_04145) | - | 839749..840084 (+) | 336 | WP_031559267.1 | hypothetical protein | - |
| ACLFAM_RS04150 (ACLFAM_04150) | - | 840151..841332 (+) | 1182 | WP_031559268.1 | tyrosine-type recombinase/integrase | - |
| ACLFAM_RS04155 (ACLFAM_04155) | - | 841633..842139 (-) | 507 | WP_012898444.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACLFAM_RS04160 (ACLFAM_04160) | - | 842160..842348 (-) | 189 | WP_012898445.1 | DUF2273 domain-containing protein | - |
| ACLFAM_RS04165 (ACLFAM_04165) | amaP | 842359..842919 (-) | 561 | WP_010906186.1 | alkaline shock response membrane anchor protein AmaP | - |
| ACLFAM_RS04170 (ACLFAM_04170) | - | 842947..843189 (-) | 243 | WP_003131476.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| ACLFAM_RS04175 (ACLFAM_04175) | fmt | 843364..844323 (-) | 960 | WP_023189127.1 | methionyl-tRNA formyltransferase | - |
| ACLFAM_RS04180 (ACLFAM_04180) | - | 844320..844784 (-) | 465 | WP_003131474.1 | VOC family protein | - |
| ACLFAM_RS04185 (ACLFAM_04185) | - | 844750..845271 (-) | 522 | WP_023189128.1 | NUDIX hydrolase | - |
| ACLFAM_RS04190 (ACLFAM_04190) | - | 845284..845658 (-) | 375 | WP_025017158.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15815.50 Da Isoelectric Point: 5.1972
>NTDB_id=1088546 ACLFAM_RS04075 WP_039116136.1 833030..833455(-) (ssb) [Lactococcus lactis strain L-WY410]
MINNVTLVGRITKEPELRYTQQNKAVASFTLAVNRQFKNSNGERETDFINCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVSNPAAKPQNNDSFGSDPIEISDDDLPF
MINNVTLVGRITKEPELRYTQQNKAVASFTLAVNRQFKNSNGERETDFINCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVSNPAAKPQNNDSFGSDPIEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1088546 ACLFAM_RS04075 WP_039116136.1 833030..833455(-) (ssb) [Lactococcus lactis strain L-WY410]
ATGATTAATAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTCCAATGGAGAAAGAGAAACTGACTTTATCAATTGTGTTATCT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTAGTAATCCAGCTGCAAAACCACAAAATAACGATTCTTTTGGAAGTGATCCAATAGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAATAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTCCAATGGAGAAAGAGAAACTGACTTTATCAATTGTGTTATCT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTAGTAATCCAGCTGCAAAACCACAAAATAACGATTCTTTTGGAAGTGATCCAATAGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.645 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.163 |
100 |
0.624 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.553 |
100 |
0.426 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.553 |
100 |
0.426 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.769 |
73.759 |
0.411 |
| ssbA | Streptococcus mutans UA159 |
38.298 |
100 |
0.383 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.515 |
73.05 |
0.362 |