Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACLII2_RS02560 Genome accession   NZ_CP178213
Coordinates   476852..477193 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471852..482193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS02520 rapD 471986..473050 (-) 1065 WP_003227782.1 aspartate phosphatase RapD -
  ACLII2_RS02525 fabZ 473242..473667 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACLII2_RS02530 mscL 473740..474132 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  ACLII2_RS02535 ywpD 474179..475015 (-) 837 WP_003227787.1 sensor histidine kinase -
  ACLII2_RS02540 - 475049..475201 (+) 153 Protein_503 prealbumin-like fold domain-containing protein -
  ACLII2_RS02545 - 475275..475667 (+) 393 Protein_504 class A sortase -
  ACLII2_RS02550 ywpF 475807..476217 (-) 411 WP_003227794.1 YwpF-like family protein -
  ACLII2_RS02555 ywpG 476392..476775 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  ACLII2_RS02560 ssbB 476852..477193 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACLII2_RS02565 glcR 477417..478193 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  ACLII2_RS02570 ywpJ 478199..479056 (+) 858 WP_003242946.1 phosphatase YwpJ -
  ACLII2_RS02575 hepAB 479182..481950 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=1088271 ACLII2_RS02560 WP_003227798.1 476852..477193(+) (ssbB) [Bacillus subtilis subsp. subtilis strain BM107]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1088271 ACLII2_RS02560 WP_003227798.1 476852..477193(+) (ssbB) [Bacillus subtilis subsp. subtilis strain BM107]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment