Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLIMH_RS10575 Genome accession   NZ_CP177046
Coordinates   2051621..2051980 (+) Length   119 a.a.
NCBI ID   WP_128294947.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain MPB12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2046621..2056980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMH_RS10560 (ACLIMH_10560) - 2048409..2049140 (+) 732 WP_070171398.1 Bax inhibitor-1/YccA family membrane protein -
  ACLIMH_RS10565 (ACLIMH_10565) - 2049318..2049857 (+) 540 WP_411470091.1 hypothetical protein -
  ACLIMH_RS10570 (ACLIMH_10570) - 2049888..2051387 (+) 1500 WP_411470092.1 hypothetical protein -
  ACLIMH_RS10575 (ACLIMH_10575) ssbA 2051621..2051980 (+) 360 WP_128294947.1 single-stranded DNA-binding protein Machinery gene
  ACLIMH_RS10580 (ACLIMH_10580) - 2052101..2053228 (+) 1128 WP_087931717.1 conserved virulence factor C family protein -
  ACLIMH_RS10585 (ACLIMH_10585) - 2053232..2053615 (+) 384 WP_087931718.1 thiol-disulfide oxidoreductase DCC family protein -
  ACLIMH_RS10590 (ACLIMH_10590) - 2053699..2054133 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  ACLIMH_RS10595 (ACLIMH_10595) - 2054183..2054959 (+) 777 WP_087931719.1 class I SAM-dependent methyltransferase -
  ACLIMH_RS10600 (ACLIMH_10600) argS 2055259..2056947 (+) 1689 WP_087931720.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13672.62 Da        Isoelectric Point: 9.6705

>NTDB_id=1085262 ACLIMH_RS10575 WP_128294947.1 2051621..2051980(+) (ssbA) [Bacillus thuringiensis strain MPB12]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTR
NYEGDKGKRTYITEVMIESITFLEKRREDASKKDGTWGN

Nucleotide


Download         Length: 360 bp        

>NTDB_id=1085262 ACLIMH_RS10575 WP_128294947.1 2051621..2051980(+) (ssbA) [Bacillus thuringiensis strain MPB12]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGTGTTGCATATGC
ACGAGTATGTGTTGCAGTGAATAGGGGTTTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAGATCAGCTGAGAATGTAACTGAATATTGCACGAAAGGGTCTCTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGGTGATAAAGGAAAGAGGACATATATAACTGAAGTTATGATTGAAAGTATTACCTTTTTGGAGAAAAGGCG
GGAGGATGCATCAAAAAAAGATGGGACTTGGGGGAATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

89.076

0.521
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

94.118

0.487
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

89.076

0.471
  ssbB Lactococcus lactis subsp. cremoris KW2

44.828

97.479

0.437
  ssbA Streptococcus mutans UA159

42.241

97.479

0.412
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.105

95.798

0.403
  ssbB/cilA Streptococcus pneumoniae D39

41.228

95.798

0.395
  ssbB/cilA Streptococcus pneumoniae R6

41.228

95.798

0.395
  ssbB/cilA Streptococcus pneumoniae Rx1

41.228

95.798

0.395
  ssbB/cilA Streptococcus mitis SK321

41.228

95.798

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

40.351

95.798

0.387

Multiple sequence alignment