Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | AACH71_RS15475 | Genome accession | NZ_AP029050 |
| Coordinates | 3044370..3044711 (+) | Length | 113 a.a. |
| NCBI ID | WP_014665657.1 | Uniprot ID | - |
| Organism | Bacillus stercoris strain BST19 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3039370..3049711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH71_RS15460 (BSB_29610) | - | 3042629..3043267 (+) | 639 | WP_169051579.1 | class A sortase | - |
| AACH71_RS15465 (BSB_29620) | - | 3043325..3043735 (-) | 411 | WP_014665659.1 | YwpF-like family protein | - |
| AACH71_RS15470 (BSB_29630) | ywpG | 3043910..3044293 (+) | 384 | WP_014665658.1 | DynA interaction protein YwpG | - |
| AACH71_RS15475 (BSB_29640) | ssbB | 3044370..3044711 (+) | 342 | WP_014665657.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| AACH71_RS15480 (BSB_29650) | glcR | 3044934..3045710 (+) | 777 | WP_136653851.1 | transcriptional regulator GlcR | - |
| AACH71_RS15485 (BSB_29660) | ywpJ | 3045716..3046573 (+) | 858 | WP_014665655.1 | phosphatase YwpJ | - |
| AACH71_RS15490 (BSB_29670) | - | 3046698..3049466 (-) | 2769 | WP_103031140.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12476.14 Da Isoelectric Point: 7.8150
>NTDB_id=108287 AACH71_RS15475 WP_014665657.1 3044370..3044711(+) (ssbB) [Bacillus stercoris strain BST19]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=108287 AACH71_RS15475 WP_014665657.1 3044370..3044711(+) (ssbB) [Bacillus stercoris strain BST19]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
98.23 |
100 |
0.982 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |