Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACJZU6_RS03635 | Genome accession | NZ_CP175534 |
| Coordinates | 749318..749719 (-) | Length | 133 a.a. |
| NCBI ID | WP_408900657.1 | Uniprot ID | - |
| Organism | Photobacterium piscicola strain WVL24019 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 744318..754719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJZU6_RS03615 (ACJZU6_03615) | coaE | 744812..745417 (-) | 606 | WP_080158304.1 | dephospho-CoA kinase | - |
| ACJZU6_RS03620 (ACJZU6_03620) | pilD | 745421..746296 (-) | 876 | WP_408900655.1 | prepilin peptidase | Machinery gene |
| ACJZU6_RS03625 (ACJZU6_03625) | pilC | 746360..747580 (-) | 1221 | WP_107276463.1 | type II secretion system F family protein | Machinery gene |
| ACJZU6_RS03630 (ACJZU6_03630) | pilB | 747633..749318 (-) | 1686 | WP_408900656.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACJZU6_RS03635 (ACJZU6_03635) | pilA | 749318..749719 (-) | 402 | WP_408900657.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACJZU6_RS03640 (ACJZU6_03640) | nadC | 750089..750976 (-) | 888 | WP_408900913.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACJZU6_RS03645 (ACJZU6_03645) | ampD | 751363..751908 (+) | 546 | WP_408900658.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACJZU6_RS03650 (ACJZU6_03650) | pdhR | 752216..752989 (+) | 774 | WP_080158298.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 13278.21 Da Isoelectric Point: 8.4716
>NTDB_id=1077917 ACJZU6_RS03635 WP_408900657.1 749318..749719(-) (pilA) [Photobacterium piscicola strain WVL24019]
MKKQQGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGAIAAALSSATALKTNYEDYLAVSGAAPTTSAAIGATKFSLGTV
TVTSGAIAVAVTEGGGKGAGVTLTRADNAWTCAVSASSATIKLNGCTTNETSS
MKKQQGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGAIAAALSSATALKTNYEDYLAVSGAAPTTSAAIGATKFSLGTV
TVTSGAIAVAVTEGGGKGAGVTLTRADNAWTCAVSASSATIKLNGCTTNETSS
Nucleotide
Download Length: 402 bp
>NTDB_id=1077917 ACJZU6_RS03635 WP_408900657.1 749318..749719(-) (pilA) [Photobacterium piscicola strain WVL24019]
ATGAAAAAGCAACAAGGCTTTACCCTTATTGAACTGATGATCGTGGTAGCGGTGATCGGTGTGTTATCGGCAATTGCAAT
TCCTAAATATCAACAATATGTAGAAAAAGGAGCTATTGCAGCGGCTCTATCATCAGCAACAGCTTTAAAAACTAATTATG
AAGATTATCTTGCAGTCAGCGGAGCTGCACCAACAACATCAGCTGCAATTGGAGCAACAAAATTTAGCCTTGGAACTGTA
ACAGTAACCTCTGGTGCAATAGCAGTAGCTGTTACTGAAGGTGGCGGTAAAGGAGCAGGAGTTACTCTAACTAGAGCGGA
TAATGCTTGGACATGTGCCGTTAGTGCATCAAGTGCAACTATAAAATTAAATGGCTGTACAACTAACGAAACTAGTAGCT
AA
ATGAAAAAGCAACAAGGCTTTACCCTTATTGAACTGATGATCGTGGTAGCGGTGATCGGTGTGTTATCGGCAATTGCAAT
TCCTAAATATCAACAATATGTAGAAAAAGGAGCTATTGCAGCGGCTCTATCATCAGCAACAGCTTTAAAAACTAATTATG
AAGATTATCTTGCAGTCAGCGGAGCTGCACCAACAACATCAGCTGCAATTGGAGCAACAAAATTTAGCCTTGGAACTGTA
ACAGTAACCTCTGGTGCAATAGCAGTAGCTGTTACTGAAGGTGGCGGTAAAGGAGCAGGAGTTACTCTAACTAGAGCGGA
TAATGCTTGGACATGTGCCGTTAGTGCATCAAGTGCAACTATAAAATTAAATGGCTGTACAACTAACGAAACTAGTAGCT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.315 |
100 |
0.541 |
| pilA | Vibrio cholerae strain A1552 |
49.315 |
100 |
0.541 |
| pilA | Vibrio cholerae C6706 |
49.315 |
100 |
0.541 |
| pilA | Pseudomonas aeruginosa PAK |
39.333 |
100 |
0.444 |
| pilA | Acinetobacter baumannii strain A118 |
41.727 |
100 |
0.436 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.441 |
100 |
0.414 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.568 |
100 |
0.414 |
| pilA/pilA1 | Eikenella corrodens VA1 |
34.783 |
100 |
0.361 |