Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJZU6_RS03625 Genome accession   NZ_CP175534
Coordinates   746360..747580 (-) Length   406 a.a.
NCBI ID   WP_107276463.1    Uniprot ID   -
Organism   Photobacterium piscicola strain WVL24019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741360..752580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJZU6_RS03600 (ACJZU6_03600) mutT 743280..743687 (-) 408 WP_080158398.1 8-oxo-dGTP diphosphatase MutT -
  ACJZU6_RS03605 (ACJZU6_03605) yacG 743820..744020 (-) 201 WP_080158306.1 DNA gyrase inhibitor YacG -
  ACJZU6_RS03610 (ACJZU6_03610) zapD 744028..744765 (-) 738 WP_080158305.1 cell division protein ZapD -
  ACJZU6_RS03615 (ACJZU6_03615) coaE 744812..745417 (-) 606 WP_080158304.1 dephospho-CoA kinase -
  ACJZU6_RS03620 (ACJZU6_03620) pilD 745421..746296 (-) 876 WP_408900655.1 prepilin peptidase Machinery gene
  ACJZU6_RS03625 (ACJZU6_03625) pilC 746360..747580 (-) 1221 WP_107276463.1 type II secretion system F family protein Machinery gene
  ACJZU6_RS03630 (ACJZU6_03630) pilB 747633..749318 (-) 1686 WP_408900656.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJZU6_RS03635 (ACJZU6_03635) pilA 749318..749719 (-) 402 WP_408900657.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACJZU6_RS03640 (ACJZU6_03640) nadC 750089..750976 (-) 888 WP_408900913.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACJZU6_RS03645 (ACJZU6_03645) ampD 751363..751908 (+) 546 WP_408900658.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45334.27 Da        Isoelectric Point: 9.1600

>NTDB_id=1077915 ACJZU6_RS03625 WP_107276463.1 746360..747580(-) (pilC) [Photobacterium piscicola strain WVL24019]
MVAATKIRYYQWRGINQAGRKVSGVTMGFQEQEVRHQLTEQMINIKKIKRTSPGTLDRLRNQMKPEDVTMVTRQLSTMVE
SGVPVVQALTLMANSHHKAEMRATLIQVTNQVEAGSSLAKAMRSSSPLFDKFYCDLVDTGEQTGHLGQVFGRIAVYREKA
EAMRKKIIKAMIYPSMVSITAILVTVLMLVFVIPQFAAIFSGFGAELPWFTRQVMKASDFLIDYGYYLGGGIVLTIIIYR
YCYRQYYGFHYRVDKLSLKLPIVGGVLLKATISRFARTLATTFNAGIPLLTGIQSAGKTSNNLYIEQAIDEVYNSTAAGM
PLYLALRQADVFPELMLQMVMIGEESGALDDMLNKMAQLYEDDVDNTVDNLGQIMEPFIIIILGIIIGGLLVAMYMPIFT
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1077915 ACJZU6_RS03625 WP_107276463.1 746360..747580(-) (pilC) [Photobacterium piscicola strain WVL24019]
ATGGTTGCTGCCACTAAAATTCGTTACTACCAATGGCGGGGCATCAATCAAGCCGGACGTAAAGTCTCAGGCGTCACAAT
GGGATTTCAAGAACAAGAAGTCCGTCATCAGCTCACCGAGCAAATGATCAATATTAAAAAGATCAAACGCACCTCTCCCG
GCACCTTAGATCGACTTCGTAACCAAATGAAGCCCGAAGATGTCACCATGGTGACACGTCAATTATCGACCATGGTTGAA
TCAGGCGTTCCTGTAGTACAAGCATTAACCTTAATGGCTAACAGTCACCACAAAGCAGAAATGCGCGCTACCCTAATTCA
GGTGACCAACCAAGTTGAAGCCGGATCATCATTAGCCAAAGCAATGCGCTCTAGCTCGCCATTGTTTGATAAATTTTATT
GTGACTTGGTCGATACGGGTGAGCAAACCGGTCACCTTGGGCAAGTATTTGGCCGCATTGCGGTGTATCGCGAAAAAGCC
GAAGCAATGCGTAAAAAAATCATCAAAGCGATGATCTACCCTTCGATGGTCTCTATCACCGCCATCTTAGTTACAGTGTT
AATGCTGGTGTTTGTTATTCCACAGTTTGCGGCTATTTTCAGTGGCTTTGGCGCAGAACTGCCATGGTTTACGCGCCAAG
TCATGAAGGCTTCAGACTTTCTCATTGATTATGGTTATTATCTTGGCGGTGGCATTGTGCTGACCATCATCATCTACCGT
TATTGCTATCGCCAGTATTATGGTTTTCATTATCGTGTCGATAAACTGAGCCTAAAGCTACCTATTGTTGGTGGAGTATT
ACTTAAAGCGACCATTTCTCGTTTTGCTCGCACTCTCGCCACCACCTTTAATGCTGGTATCCCACTGTTAACTGGCATTC
AATCGGCGGGAAAAACCAGTAATAATCTTTATATCGAACAAGCGATTGATGAAGTTTATAACAGTACCGCCGCCGGTATG
CCATTATACTTAGCCCTGCGTCAAGCCGATGTTTTTCCAGAATTAATGCTGCAAATGGTGATGATTGGTGAAGAATCGGG
GGCACTTGATGATATGCTCAATAAAATGGCACAGTTATACGAAGATGATGTTGATAATACTGTCGATAATCTGGGCCAAA
TTATGGAACCGTTTATTATCATTATTCTTGGTATCATTATCGGTGGTTTATTAGTCGCGATGTACATGCCTATCTTTACG
CTAATGAGCGTTATAGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

53.75

98.522

0.53
  pilC Vibrio campbellii strain DS40M4

51.365

99.261

0.51
  pilG Neisseria meningitidis 44/76-A

40.394

100

0.404
  pilG Neisseria gonorrhoeae MS11

40.148

100

0.401
  pilC Pseudomonas stutzeri DSM 10701

39.801

99.015

0.394
  pilC Acinetobacter baylyi ADP1

40.302

97.783

0.394
  pilC Acinetobacter baumannii D1279779

39.295

97.783

0.384
  pilC Legionella pneumophila strain ERS1305867

38.442

98.03

0.377

Multiple sequence alignment