Detailed information NTG1077914

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJZU6_RS03620
• Genome accession: NZ_CP175534
• Coordinates: 745421..746296 (-)
• Length: 291 a.a.
• NCBI ID: WP_408900655.1
• Uniprot ID: -
• Organism: Photobacterium piscicola strain WVL24019
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 740421..751296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJZU6_RS03600 (ACJZU6_03600)	mutT	743280..743687 (-)	408	WP_080158398.1	8-oxo-dGTP diphosphatase MutT	-
ACJZU6_RS03605 (ACJZU6_03605)	yacG	743820..744020 (-)	201	WP_080158306.1	DNA gyrase inhibitor YacG	-
ACJZU6_RS03610 (ACJZU6_03610)	zapD	744028..744765 (-)	738	WP_080158305.1	cell division protein ZapD	-
ACJZU6_RS03615 (ACJZU6_03615)	coaE	744812..745417 (-)	606	WP_080158304.1	dephospho-CoA kinase	-
ACJZU6_RS03620 (ACJZU6_03620)	pilD	745421..746296 (-)	876	WP_408900655.1	prepilin peptidase	Machinery gene
ACJZU6_RS03625 (ACJZU6_03625)	pilC	746360..747580 (-)	1221	WP_107276463.1	type II secretion system F family protein	Machinery gene
ACJZU6_RS03630 (ACJZU6_03630)	pilB	747633..749318 (-)	1686	WP_408900656.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJZU6_RS03635 (ACJZU6_03635)	pilA	749318..749719 (-)	402	WP_408900657.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACJZU6_RS03640 (ACJZU6_03640)	nadC	750089..750976 (-)	888	WP_408900913.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32419.72 Da
• Isoelectric Point: 7.1974

>NTDB_id=1077914 ACJZU6_RS03620 WP_408900655.1 745421..746296(-) (pilD) [Photobacterium piscicola strain WVL24019]
MAVLSYYPWLYPLFATILGLLIGSFLNVVIYRLPIMMERQWRQECHDCFPELDVPLQNDPTPFNLSVPRSRCPHCNHAIS
ALENIPLISWLVLKGKCRECHAPISKRYPAIELLTAIISLTVALMLPPTWWAVAVLGASFALIALTFIDIDKMLLPDQIT
LPLMWTGILLALSGISPVSLTDSIIGAMAGYLSLWSVFWAFKLLTKKDGMGYGDFKLLAAIGAWVGWSLLPFVVLLSSLV
GAICGIIMLRIKQEDQQTPFSFGPYLAVAGWIAMLWGQPILNWYVGSYLGF

Nucleotide

• Length: 876 bp

>NTDB_id=1077914 ACJZU6_RS03620 WP_408900655.1 745421..746296(-) (pilD) [Photobacterium piscicola strain WVL24019]
ATGGCTGTACTGAGTTATTACCCGTGGCTGTATCCACTGTTTGCTACGATTTTGGGTTTATTGATTGGTAGTTTTTTAAA
TGTGGTTATTTATCGGCTACCGATCATGATGGAACGTCAGTGGCGTCAAGAATGCCATGATTGCTTTCCTGAACTTGATG
TGCCACTTCAAAATGATCCAACGCCATTTAATCTCAGCGTTCCCCGTTCTCGTTGCCCTCACTGCAACCATGCCATTAGT
GCACTAGAAAATATTCCGCTTATTAGCTGGTTAGTATTAAAAGGCAAATGCCGCGAGTGCCATGCGCCAATCAGTAAGCG
CTATCCCGCAATTGAACTTCTGACCGCGATTATTAGCTTAACCGTTGCGCTCATGTTGCCGCCAACATGGTGGGCTGTTG
CTGTTTTAGGCGCAAGCTTTGCTCTGATCGCGCTGACCTTTATTGATATCGACAAAATGCTACTGCCGGATCAAATCACG
CTACCATTGATGTGGACGGGAATTTTATTGGCTTTAAGTGGTATCAGTCCGGTTTCATTAACTGATTCTATTATTGGCGC
AATGGCGGGGTATTTATCGCTGTGGTCGGTATTTTGGGCGTTTAAATTACTGACCAAAAAAGATGGCATGGGCTATGGTG
ATTTTAAACTACTGGCGGCGATTGGCGCATGGGTAGGCTGGTCATTATTGCCATTTGTGGTGCTACTGTCTTCTCTAGTG
GGCGCAATATGCGGCATTATCATGCTACGTATCAAGCAGGAAGATCAACAAACCCCGTTCTCTTTTGGACCATACCTTGC
TGTCGCTGGCTGGATTGCTATGCTATGGGGCCAACCAATTTTAAATTGGTATGTTGGCTCTTATTTAGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	61.034	99.656	0.608
pilD	Vibrio cholerae strain A1552	59.794	100	0.598
pilD	Acinetobacter nosocomialis M2	52.381	93.814	0.491
pilD	Acinetobacter baumannii D1279779	51.46	94.158	0.485
pilD	Neisseria gonorrhoeae MS11	48.352	93.814	0.454