Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJJVB_RS05370 Genome accession   NZ_CP174502
Coordinates   1152265..1153482 (-) Length   405 a.a.
NCBI ID   WP_407733170.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain ISHS.CFo     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147265..1158482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVB_RS05325 (ACJJVB_05325) - 1147489..1147905 (+) 417 WP_407733167.1 GNAT family N-acetyltransferase -
  ACJJVB_RS05330 (ACJJVB_05330) - 1147908..1148378 (+) 471 WP_407733168.1 FAD/FMN-containing dehydrogenase -
  ACJJVB_RS05335 (ACJJVB_05335) - 1148375..1149091 (+) 717 WP_328565634.1 energy-coupling factor ABC transporter permease -
  ACJJVB_RS05340 (ACJJVB_05340) - 1149199..1149414 (+) 216 WP_089390514.1 hypothetical protein -
  ACJJVB_RS05345 (ACJJVB_05345) - 1149702..1149815 (-) 114 Protein_1050 PIN domain nuclease -
  ACJJVB_RS05350 (ACJJVB_05350) - 1149815..1150054 (-) 240 WP_275627642.1 ribbon-helix-helix domain-containing protein -
  ACJJVB_RS05355 (ACJJVB_05355) yacG 1150507..1150716 (-) 210 WP_089390516.1 DNA gyrase inhibitor YacG -
  ACJJVB_RS05360 (ACJJVB_05360) coaE 1150713..1151321 (-) 609 WP_089390517.1 dephospho-CoA kinase -
  ACJJVB_RS05365 (ACJJVB_05365) pilD 1151390..1152262 (-) 873 WP_407733169.1 prepilin peptidase Machinery gene
  ACJJVB_RS05370 (ACJJVB_05370) pilC 1152265..1153482 (-) 1218 WP_407733170.1 type II secretion system F family protein Machinery gene
  ACJJVB_RS05375 (ACJJVB_05375) pilB 1153486..1155189 (-) 1704 WP_407733171.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJJVB_RS05380 (ACJJVB_05380) pilA 1155416..1155811 (+) 396 WP_407733172.1 pilin Machinery gene
  ACJJVB_RS05385 (ACJJVB_05385) - 1156026..1157768 (+) 1743 WP_407733173.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44199.05 Da        Isoelectric Point: 9.8269

>NTDB_id=1077393 ACJJVB_RS05370 WP_407733170.1 1152265..1153482(-) (pilC) [Pseudomonas citronellolis strain ISHS.CFo]
MAEKAVKMSVFTWEGTDRKGGKVKGELTGTNSALVKAQLRKQGINPIKVRKKGISLLGKGKKIKPMDIALFTRQMATMMG
SGVPLLQSFDIIAEGFDNPNMRKLVEDIKQEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIIVAIIVSAILLIKVVPQFQSVFQGFGAELPAFTLFVIQISEILQSWWFVVLIAMFGIGFSFR
EAYRRSENLRDTIDRLLLKIPVIGMILYKSAVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVTKIKQDVSSGT
QLNFSMRTTGIFPSMAVQMAAIGEESGSLDAMLDKVATFYEEEVDNAVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1077393 ACJJVB_RS05370 WP_407733170.1 1152265..1153482(-) (pilC) [Pseudomonas citronellolis strain ISHS.CFo]
ATGGCGGAAAAAGCAGTGAAGATGAGCGTCTTTACCTGGGAGGGTACGGACCGCAAGGGTGGTAAGGTCAAAGGGGAGCT
GACTGGGACCAACAGCGCCCTCGTCAAGGCGCAGTTGCGCAAGCAAGGCATCAATCCAATCAAAGTACGCAAGAAAGGCA
TCTCGCTGCTAGGGAAGGGCAAGAAGATCAAGCCCATGGACATCGCCCTGTTTACTCGGCAGATGGCTACCATGATGGGA
TCAGGTGTCCCCTTGCTGCAATCCTTCGACATCATTGCGGAAGGCTTCGACAACCCCAACATGCGCAAGCTGGTCGAGGA
TATTAAACAGGAAGTGGCTGCCGGTAACAGCCTAGCCAACTCATTACGTAAGAAACCCCAATACTTCGACGATCTTTACT
GCAACCTAGTCGATGCGGGCGAACAGTCCGGCGCATTGGAAACGCTGTTGGATCGCGTAGCCACTTACAAGGAAAAAACC
GAGTCGCTTAAAGCCAAGATCAAGAAGGCGATGACCTACCCAATTGCAGTAATTATCGTAGCGATCATCGTTTCTGCCAT
TCTGCTGATCAAAGTTGTGCCTCAGTTTCAATCTGTATTTCAAGGCTTTGGTGCCGAGCTTCCAGCCTTCACATTATTCG
TTATTCAAATTTCGGAAATTCTACAGTCTTGGTGGTTTGTGGTTCTTATCGCCATGTTCGGTATCGGTTTCTCATTTCGT
GAAGCCTATAGGCGCTCCGAGAACCTCAGGGACACTATAGATCGCCTTCTTTTGAAGATCCCCGTGATCGGCATGATTCT
CTACAAATCCGCCGTTGCACGTTACGCTCGCACATTGGCTACAACCTTTGCTGCAGGGGTTCCCCTCGTGGAGGCATTGG
ACTCAGTTGCTGGCGCCACAGGAAACGTGGTATTTCGCAATGCTGTTACCAAGATAAAACAGGACGTATCTTCAGGTACC
CAATTGAACTTTTCCATGCGAACCACTGGCATATTTCCCAGTATGGCGGTGCAAATGGCTGCAATCGGCGAGGAGTCAGG
CTCTCTCGACGCCATGCTGGATAAAGTAGCCACCTTCTATGAAGAAGAAGTCGACAACGCTGTGGACAACCTTACAACGT
TGATGGAGCCACTGATCATGGCCGTCCTCGGCGTACTGGTCGGCGGCCTGATCATCGCCATGTACCTCCCCATCTTCCAA
CTGGGTTCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80

100

0.8
  pilC Acinetobacter baumannii D1279779

60.247

100

0.602
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Legionella pneumophila strain ERS1305867

56.061

97.778

0.548
  pilG Neisseria meningitidis 44/76-A

44.776

99.259

0.444
  pilG Neisseria gonorrhoeae MS11

44.527

99.259

0.442
  pilC Vibrio cholerae strain A1552

41.975

100

0.42
  pilC Vibrio campbellii strain DS40M4

39.655

100

0.398
  pilC Thermus thermophilus HB27

38.462

99.506

0.383

Multiple sequence alignment