Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACJJVB_RS05365 | Genome accession | NZ_CP174502 |
| Coordinates | 1151390..1152262 (-) | Length | 290 a.a. |
| NCBI ID | WP_407733169.1 | Uniprot ID | - |
| Organism | Pseudomonas citronellolis strain ISHS.CFo | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1146390..1157262
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJJVB_RS05315 (ACJJVB_05315) | - | 1146484..1146657 (-) | 174 | WP_009617611.1 | DUF3094 family protein | - |
| ACJJVB_RS05320 (ACJJVB_05320) | - | 1146727..1147356 (-) | 630 | WP_407733166.1 | DUF1780 domain-containing protein | - |
| ACJJVB_RS05325 (ACJJVB_05325) | - | 1147489..1147905 (+) | 417 | WP_407733167.1 | GNAT family N-acetyltransferase | - |
| ACJJVB_RS05330 (ACJJVB_05330) | - | 1147908..1148378 (+) | 471 | WP_407733168.1 | FAD/FMN-containing dehydrogenase | - |
| ACJJVB_RS05335 (ACJJVB_05335) | - | 1148375..1149091 (+) | 717 | WP_328565634.1 | energy-coupling factor ABC transporter permease | - |
| ACJJVB_RS05340 (ACJJVB_05340) | - | 1149199..1149414 (+) | 216 | WP_089390514.1 | hypothetical protein | - |
| ACJJVB_RS05345 (ACJJVB_05345) | - | 1149702..1149815 (-) | 114 | Protein_1050 | PIN domain nuclease | - |
| ACJJVB_RS05350 (ACJJVB_05350) | - | 1149815..1150054 (-) | 240 | WP_275627642.1 | ribbon-helix-helix domain-containing protein | - |
| ACJJVB_RS05355 (ACJJVB_05355) | yacG | 1150507..1150716 (-) | 210 | WP_089390516.1 | DNA gyrase inhibitor YacG | - |
| ACJJVB_RS05360 (ACJJVB_05360) | coaE | 1150713..1151321 (-) | 609 | WP_089390517.1 | dephospho-CoA kinase | - |
| ACJJVB_RS05365 (ACJJVB_05365) | pilD | 1151390..1152262 (-) | 873 | WP_407733169.1 | prepilin peptidase | Machinery gene |
| ACJJVB_RS05370 (ACJJVB_05370) | pilC | 1152265..1153482 (-) | 1218 | WP_407733170.1 | type II secretion system F family protein | Machinery gene |
| ACJJVB_RS05375 (ACJJVB_05375) | pilB | 1153486..1155189 (-) | 1704 | WP_407733171.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACJJVB_RS05380 (ACJJVB_05380) | pilA | 1155416..1155811 (+) | 396 | WP_407733172.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31916.87 Da Isoelectric Point: 7.0170
>NTDB_id=1077392 ACJJVB_RS05365 WP_407733169.1 1151390..1152262(-) (pilD) [Pseudomonas citronellolis strain ISHS.CFo]
MPVLDFLASHALAFVLCAALLGLLIGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQKATYNLVLPNSQCPHCGHEIH
AWENIPVVSYLALRGKCSACKAPISARYPLVELATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDRQLLPDALV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG
AVLGVILLRLRNAETGTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR
MPVLDFLASHALAFVLCAALLGLLIGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQKATYNLVLPNSQCPHCGHEIH
AWENIPVVSYLALRGKCSACKAPISARYPLVELATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDRQLLPDALV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG
AVLGVILLRLRNAETGTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR
Nucleotide
Download Length: 873 bp
>NTDB_id=1077392 ACJJVB_RS05365 WP_407733169.1 1151390..1152262(-) (pilD) [Pseudomonas citronellolis strain ISHS.CFo]
ATGCCTGTACTCGACTTCCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGCCTTCTGATCGGCAG
CTTCCTCAACGTAGTCATCCATCGCCTGCCGAAGATGATGGAGCTGGAATGGCAACAGCAGGCGCGGGATGCGCTTTCCC
TGCCCCAGCCCGAGCAGAAGGCCACCTACAACCTGGTGCTGCCCAACTCCCAGTGCCCGCATTGCGGCCATGAGATCCAT
GCCTGGGAGAACATCCCCGTGGTGAGCTACCTGGCCCTGCGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
CTATCCGCTGGTCGAGCTGGCCACCGCCCTGCTCTCCGGTTTCGTTGCCTGGCACTTTGGTTTTACCTGGCAGGCCGGGG
CCATGCTGTTGCTGACCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTCGACCGCCAGTTGCTGCCGGATGCGCTGGTC
CTGCCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTCGCCAGCCTGGGCGATGCGCTCTGGGGGGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGGGTCATTCTGCTGCGCCTGCGCAATGCCGAGACCGGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGCTTCCGGTAA
ATGCCTGTACTCGACTTCCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGCCTTCTGATCGGCAG
CTTCCTCAACGTAGTCATCCATCGCCTGCCGAAGATGATGGAGCTGGAATGGCAACAGCAGGCGCGGGATGCGCTTTCCC
TGCCCCAGCCCGAGCAGAAGGCCACCTACAACCTGGTGCTGCCCAACTCCCAGTGCCCGCATTGCGGCCATGAGATCCAT
GCCTGGGAGAACATCCCCGTGGTGAGCTACCTGGCCCTGCGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
CTATCCGCTGGTCGAGCTGGCCACCGCCCTGCTCTCCGGTTTCGTTGCCTGGCACTTTGGTTTTACCTGGCAGGCCGGGG
CCATGCTGTTGCTGACCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTCGACCGCCAGTTGCTGCCGGATGCGCTGGTC
CTGCCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTCGCCAGCCTGGGCGATGCGCTCTGGGGGGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGGGTCATTCTGCTGCGCCTGCGCAATGCCGAGACCGGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGCTTCCGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
58.123 |
95.517 |
0.555 |
| pilD | Vibrio campbellii strain DS40M4 |
56.044 |
94.138 |
0.528 |
| pilD | Acinetobacter baumannii D1279779 |
52.982 |
98.276 |
0.521 |
| pilD | Acinetobacter nosocomialis M2 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
50.57 |
90.69 |
0.459 |