Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACJD0W_RS13610 Genome accession   NZ_CP174456
Coordinates   2983026..2984759 (-) Length   577 a.a.
NCBI ID   WP_354419523.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2978026..2989759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS13590 - 2978705..2979544 (-) 840 WP_010443897.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  ACJD0W_RS13595 - 2979614..2981134 (-) 1521 WP_407832518.1 AAA family ATPase -
  ACJD0W_RS13600 aroB 2981186..2982286 (-) 1101 WP_407832519.1 3-dehydroquinate synthase -
  ACJD0W_RS13605 aroK 2982318..2982836 (-) 519 WP_010443904.1 shikimate kinase AroK -
  ACJD0W_RS13610 pilQ 2983026..2984759 (-) 1734 WP_354419523.1 type IV pilus secretin PilQ family protein Machinery gene
  ACJD0W_RS13615 pilP 2984797..2985312 (-) 516 WP_010443909.1 pilus assembly protein PilP Machinery gene
  ACJD0W_RS13620 pilO 2985302..2985895 (-) 594 WP_038885610.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJD0W_RS13625 pilN 2985892..2986476 (-) 585 WP_010443929.1 PilN domain-containing protein Machinery gene
  ACJD0W_RS13630 pilM 2986460..2987476 (-) 1017 WP_407832520.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63509.65 Da        Isoelectric Point: 4.5148

>NTDB_id=1077136 ACJD0W_RS13610 WP_354419523.1 2983026..2984759(-) (pilQ) [Vibrio rotiferianus strain BD182406]
MRQGYTLRYRKLFELLWLWSLLLMAPFVWAEESSSNALKSIDFRTNKDKEAVIIVELASPAAIVDVKRVQEGLSIDLLNT
SVEDSQLYLLDVKDFSTAVDSVEVFRDAATTRLLAHIEGDYTHDYRLTGRYLEVKVARLKPNEKVPDKSILEKEGKLISI
NFQDIPVRNVLQLIADYNDFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQLE
KLKLEEEIGELSSEIIKVNFAKASDIAQMINGEGNISMLSVRGSMTIDERTNSLLIRELPENIAVIREIVESLDIPVKQV
QIEARIVTVKEGNLDELGVRWGFTSINGNNMVGGSIENNLAAIGLYDEGGNAEDGSTVGIDDFLNVNLAAASTNASSIAF
QVAKLGSDTLLDLELSALQQESKAEIISSPRLVTTNKKPAYIEQGTEIPYLEASSSGATTITFKKAVLSLKVTPQITPDN
RLVLDLSVTQDRPGKVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSNTIDKVPLLGDLPLLGALFRRTYED
VGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1077136 ACJD0W_RS13610 WP_354419523.1 2983026..2984759(-) (pilQ) [Vibrio rotiferianus strain BD182406]
ATGAGACAAGGATATACATTGAGATACAGGAAGTTATTTGAACTCTTGTGGTTATGGAGTTTGTTGTTAATGGCTCCTTT
TGTTTGGGCGGAAGAGTCGTCATCCAATGCATTGAAAAGTATTGATTTCAGGACTAACAAAGATAAAGAAGCGGTCATTA
TTGTTGAACTCGCTTCACCTGCAGCGATTGTAGATGTCAAAAGAGTTCAAGAAGGGCTTAGTATTGATTTGTTGAATACT
TCTGTAGAAGACAGCCAGCTTTACTTGCTCGATGTTAAGGATTTCTCTACCGCAGTGGATAGCGTAGAAGTTTTTAGAGA
TGCAGCAACAACTAGATTGTTGGCGCACATTGAAGGTGACTATACACATGATTACAGGCTTACGGGGAGATATCTCGAAG
TAAAAGTTGCACGCTTAAAACCGAATGAAAAGGTGCCAGATAAAAGTATCCTTGAGAAGGAAGGCAAGCTCATCTCTATT
AACTTTCAAGATATACCGGTAAGAAATGTCTTGCAGTTGATCGCTGACTACAACGATTTCAACTTGGTGGTCTCGGATTC
TGTTGAGGGGAACTTAACGTTACGCTTGGATGGTGTGCCATGGCAGCAGGTACTAGATATTATTCTGCAGGTTAAGGGGC
TAGATAAACGCGTTGATGGCAACGTTATTTTAGTCGCACCAAAAGAAGAACTGGACTTACGTGAAAAGCAGCAATTGGAG
AAGTTGAAATTAGAAGAAGAAATAGGAGAGCTTTCTTCAGAAATAATCAAAGTTAATTTTGCTAAAGCTTCAGATATTGC
TCAAATGATCAATGGTGAAGGGAATATTAGCATGCTGTCTGTCCGTGGCAGTATGACCATTGATGAACGTACAAACTCTC
TACTTATCCGTGAACTACCAGAAAATATCGCAGTAATACGTGAGATTGTTGAGTCTCTTGATATTCCTGTTAAGCAAGTT
CAGATAGAGGCCAGAATTGTGACCGTGAAAGAGGGGAACCTAGATGAATTAGGTGTTCGCTGGGGCTTCACTTCTATTAA
TGGTAATAACATGGTTGGTGGTTCAATTGAGAATAACTTGGCTGCGATTGGCTTATACGACGAAGGTGGTAATGCTGAGG
ATGGAAGCACAGTTGGAATTGATGACTTTCTGAATGTCAATTTGGCAGCTGCATCGACAAATGCAAGCAGCATCGCTTTT
CAAGTCGCTAAATTGGGCTCTGACACTCTATTGGATTTGGAGCTTTCAGCTCTACAGCAAGAATCTAAGGCTGAAATCAT
CTCAAGTCCGCGTTTGGTAACGACAAACAAAAAGCCTGCCTATATCGAGCAAGGTACAGAAATTCCTTACTTAGAGGCTT
CCTCCAGTGGTGCAACGACCATTACTTTTAAAAAAGCAGTATTGAGTCTAAAAGTTACCCCCCAGATAACGCCCGATAAC
CGCTTAGTTCTTGACCTCAGCGTGACCCAGGATAGACCTGGTAAAGTTGTTAAAACTGGGACTGGAGAAGCGGTCGCGAT
TGATACACAGCGAATCGGCACGCAAGTGTTAGTAAATAATGGTGAAACCGTTGTTTTAGGCGGCATTTTCCAACATAGTG
TCAGTAATACAATTGACAAAGTTCCGCTGCTTGGAGATTTACCTTTGTTGGGCGCTCTATTTCGCCGTACTTATGAAGAT
GTAGGTAAGAGTGAGCTGTTGATCTTTGTTACGCCTAAGGTAGTAATTCAGTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(417-575)

Bacterial type II/III secretion system short domain (Secretin_N)

(254-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

87.37

100

0.875
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.779

100

0.759
  pilQ Vibrio cholerae strain A1552

75.779

100

0.759
  pilQ Pseudomonas aeruginosa PAK

40.283

98.094

0.395
  pilQ Legionella pneumophila strain Lp02

40.288

96.36

0.388
  pilQ Legionella pneumophila strain ERS1305867

40.108

96.36

0.386
  comQ Acinetobacter baylyi ADP1

37.889

100

0.38
  pilQ Acinetobacter baumannii strain A118

36.364

100

0.374
  pilQ Acinetobacter baumannii D1279779

36.364

100

0.374

Multiple sequence alignment