Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AABJ90_RS02515 Genome accession   NZ_AP028964
Coordinates   481995..482336 (+) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 476995..487336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS02475 (BsubNA05_04790) rapD 477127..478191 (-) 1065 WP_014478211.1 aspartate phosphatase RapD -
  AABJ90_RS02480 (BsubNA05_04800) fabZ 478383..478808 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AABJ90_RS02485 (BsubNA05_04810) mscL 478881..479276 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  AABJ90_RS02490 (BsubNA05_04820) ywpD 479323..480158 (-) 836 Protein_493 histidine kinase -
  AABJ90_RS02495 (BsubNA05_04830) - 480087..480431 (+) 345 WP_338382447.1 prealbumin-like fold domain-containing protein -
  AABJ90_RS02500 (BsubNA05_04840) - 480421..480810 (+) 390 Protein_495 class A sortase -
  AABJ90_RS02505 (BsubNA05_04850) ywpF 480950..481360 (-) 411 WP_003227794.1 YwpF-like family protein -
  AABJ90_RS02510 (BsubNA05_04860) ywpG 481535..481918 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  AABJ90_RS02515 (BsubNA05_04870) ssbB 481995..482336 (+) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  AABJ90_RS02520 (BsubNA05_04880) glcR 482561..483337 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  AABJ90_RS02525 (BsubNA05_04890) ywpJ 483343..484200 (+) 858 WP_338382449.1 phosphatase YwpJ -
  AABJ90_RS02530 (BsubNA05_04900) hepA 484328..487096 (-) 2769 WP_227058213.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=107556 AABJ90_RS02515 WP_014478203.1 481995..482336(+) (ssbB) [Bacillus subtilis strain NA05 = NBRC 116153]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=107556 AABJ90_RS02515 WP_014478203.1 481995..482336(+) (ssbB) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment