Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACJED3_RS14450 Genome accession   NZ_CP174155
Coordinates   2710832..2711173 (+) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2705832..2716173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS14410 rapD 2705963..2707027 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  ACJED3_RS14415 fabZ 2707219..2707644 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACJED3_RS14420 mscL 2707717..2708112 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  ACJED3_RS14425 ywpD 2708160..2708996 (-) 837 WP_014481147.1 sensor histidine kinase -
  ACJED3_RS14430 - 2709030..2709182 (+) 153 Protein_2794 prealbumin-like fold domain-containing protein -
  ACJED3_RS14435 - 2709256..2709648 (+) 393 Protein_2795 class A sortase -
  ACJED3_RS14440 ywpF 2709788..2710198 (-) 411 WP_014481144.1 YwpF-like family protein -
  ACJED3_RS14445 ywpG 2710373..2710755 (+) 383 Protein_2797 DynA interaction protein YwpG -
  ACJED3_RS14450 ssbB 2710832..2711173 (+) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACJED3_RS14455 glcR 2711397..2712173 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  ACJED3_RS14460 ywpJ 2712179..2713036 (+) 858 WP_014481140.1 phosphatase YwpJ -
  ACJED3_RS14465 hepAB 2713162..2715930 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=1074602 ACJED3_RS14450 WP_014481141.1 2710832..2711173(+) (ssbB) [Bacillus subtilis strain G01]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1074602 ACJED3_RS14450 WP_014481141.1 2710832..2711173(+) (ssbB) [Bacillus subtilis strain G01]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment