Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ACAM22_RS07785 Genome accession   NZ_AP028929
Coordinates   1714649..1715044 (-) Length   131 a.a.
NCBI ID   WP_000282442.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1709649..1720044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS07765 (MASAN616_15040) - 1710507..1711280 (-) 774 WP_261014553.1 class I SAM-dependent methyltransferase -
  ACAM22_RS07770 (MASAN616_15050) - 1711680..1712447 (-) 768 WP_020900987.1 epoxyqueuosine reductase QueH -
  ACAM22_RS07775 (MASAN616_15060) groL 1712571..1714193 (-) 1623 WP_261053384.1 chaperonin GroEL -
  ACAM22_RS07780 (MASAN616_15070) groES 1714209..1714493 (-) 285 WP_000917330.1 co-chaperone GroES -
  ACAM22_RS07785 (MASAN616_15080) ssbB/cilA 1714649..1715044 (-) 396 WP_000282442.1 single-stranded DNA-binding protein Machinery gene
  ACAM22_RS07790 (MASAN616_15090) - 1715122..1715883 (-) 762 WP_261053395.1 SDR family NAD(P)-dependent oxidoreductase -
  ACAM22_RS07795 (MASAN616_15100) ytpR 1715925..1716551 (-) 627 WP_261053397.1 YtpR family tRNA-binding protein -
  ACAM22_RS07800 (MASAN616_15110) - 1716567..1716884 (-) 318 WP_000615777.1 thioredoxin family protein -
  ACAM22_RS07805 (MASAN616_15120) - 1716881..1717180 (-) 300 WP_001815024.1 DUF4651 domain-containing protein -
  ACAM22_RS07810 (MASAN616_15130) - 1717430..1718503 (-) 1074 WP_261053398.1 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=107341 ACAM22_RS07785 WP_000282442.1 1714649..1715044(-) (ssbB/cilA) [Streptococcus sp. SN-1]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=107341 ACAM22_RS07785 WP_000282442.1 1714649..1715044(-) (ssbB/cilA) [Streptococcus sp. SN-1]
ATGTATAATAAAGTTATCTTAATCGGACGTTTAACGTCTACACCAGAATTGCATAAAACCAACAATGACAAGTCAGTAGC
ACGAGCAACTATCGCTGTGAACCGTCGTTATAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGTAGACTAGCAGAAACTTTGGCCAGCTACGCAACCAAAGGCAGTCTCATTTCCGTTGATGGAGAATTACGTACCCGT
CGTTTTGAGAAAAATGGCCAGATGAACTATGTGACCGAAGTTCTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAACGCAGGCCAAGACTTGGCAGACCTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

99.237

100

0.992
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment