Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACI3L9_RS08745 Genome accession   NZ_CP173385
Coordinates   1919338..1920447 (+) Length   369 a.a.
NCBI ID   WP_079402768.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1914338..1925447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS08725 (ACI3L9_08725) rsmB 1915257..1916540 (-) 1284 WP_038892392.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACI3L9_RS08730 (ACI3L9_08730) fmt 1916622..1917569 (-) 948 WP_079402770.1 methionyl-tRNA formyltransferase -
  ACI3L9_RS08735 (ACI3L9_08735) def 1917603..1918121 (-) 519 WP_005450979.1 peptide deformylase -
  ACI3L9_RS08740 (ACI3L9_08740) - 1918260..1919354 (+) 1095 WP_079402769.1 LysM peptidoglycan-binding domain-containing protein -
  ACI3L9_RS08745 (ACI3L9_08745) dprA 1919338..1920447 (+) 1110 WP_079402768.1 DNA-processing protein DprA Machinery gene
  ACI3L9_RS08750 (ACI3L9_08750) - 1920450..1920929 (+) 480 WP_005429833.1 DUF494 family protein -
  ACI3L9_RS08755 (ACI3L9_08755) - 1920953..1921519 (+) 567 WP_012126634.1 type I DNA topoisomerase -
  ACI3L9_RS08760 (ACI3L9_08760) - 1921586..1922719 (-) 1134 WP_079402767.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACI3L9_RS08765 (ACI3L9_08765) purE 1922724..1923209 (-) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACI3L9_RS08770 (ACI3L9_08770) - 1923409..1923966 (+) 558 WP_079402766.1 L-threonylcarbamoyladenylate synthase -
  ACI3L9_RS08775 (ACI3L9_08775) hemF 1924001..1924918 (+) 918 WP_010645751.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39359.00 Da        Isoelectric Point: 6.0353

>NTDB_id=1071875 ACI3L9_RS08745 WP_079402768.1 1919338..1920447(+) (dprA) [Vibrio campbellii strain LB198]
MTPHNETDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLAWVAASSRHH
ILTLANALYPPLLKQTVAPPPLLFVKGEASCLSQPQIALVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1071875 ACI3L9_RS08745 WP_079402768.1 1919338..1920447(+) (dprA) [Vibrio campbellii strain LB198]
ATGACACCACACAATGAGACTGATCTCGCTGCCTGGTTAAAGCTTAGTTGCTTACCGGGCATTGGTGGGGTCAAGATGAA
TAAGTTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTGGGCCTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGGCTTGGGTTGCAGCATCTTCTCGTCATCAT
ATTCTTACTTTGGCGAATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCCCAACCTCAAATAGCTCTGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACATGCAA
GAAGCTTTGCGTCAGACTTGGTGCAACACGATCTGATCGTCACCAGTGGTTTAGCATTGGGTATTGATGGCCATGCTCAT
GATGGTGCGCTGTTAGCTGGAGGTAAAACCATCGCAGTGCTTGGCTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
CGGCTTGGCGCAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGTCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGGGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(307-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

97.29

100

0.973
  dprA Vibrio cholerae strain A1552

58.108

100

0.583
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.482
  dprA Legionella pneumophila strain ERS1305867

46.809

89.16

0.417
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis MC58

37.028

100

0.398
  dprA Neisseria meningitidis strain C311

37.028

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.132

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.878

100

0.382
  dprA Acinetobacter baylyi ADP1

40.179

91.057

0.366
  dprA Acinetobacter baumannii D1279779

41.284

88.618

0.366
  dprA Acinetobacter baumannii strain A118

40.979

88.618

0.363

Multiple sequence alignment